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/* 
* CVS identifier:
* 
* $Id: StdEntropyCoder.java,v 1.41 2002/07/04 15:53:32 grosbois Exp $
* 
* Class:                   StdEntropyCoder
* 
* Description:             Entropy coding engine of stripes in code-blocks
* 
* 
* 
* COPYRIGHT:
* 
* This software module was originally developed by Raphaël Grosbois and
* Diego Santa Cruz (Swiss Federal Institute of Technology-EPFL); Joel
* Askelöf (Ericsson Radio Systems AB); and Bertrand Berthelot, David
* Bouchard, Félix Henry, Gerard Mozelle and Patrice Onno (Canon Research
* Centre France S.A) in the course of development of the JPEG2000
* standard as specified by ISO/IEC 15444 (JPEG 2000 Standard). This
* software module is an implementation of a part of the JPEG 2000
* Standard. Swiss Federal Institute of Technology-EPFL, Ericsson Radio
* Systems AB and Canon Research Centre France S.A (collectively JJ2000
* Partners) agree not to assert against ISO/IEC and users of the JPEG
* 2000 Standard (Users) any of their rights under the copyright, not
* including other intellectual property rights, for this software module
* with respect to the usage by ISO/IEC and Users of this software module
* or modifications thereof for use in hardware or software products
* claiming conformance to the JPEG 2000 Standard. Those intending to use
* this software module in hardware or software products are advised that
* their use may infringe existing patents. The original developers of
* this software module, JJ2000 Partners and ISO/IEC assume no liability
* for use of this software module or modifications thereof. No license
* or right to this software module is granted for non JPEG 2000 Standard
* conforming products. JJ2000 Partners have full right to use this
* software module for his/her own purpose, assign or donate this
* software module to any third party and to inhibit third parties from
* using this software module for non JPEG 2000 Standard conforming
* products. This copyright notice must be included in all copies or
* derivative works of this software module.
* 
* Copyright (c) 1999/2000 JJ2000 Partners.
* */
using System;
using CSJ2K.j2k.quantization.quantizer;
using CSJ2K.j2k.wavelet.analysis;
using CSJ2K.j2k.codestream;
using CSJ2K.j2k.wavelet;
using CSJ2K.j2k.encoder;
using CSJ2K.j2k.entropy;
using CSJ2K.j2k.image;
using CSJ2K.j2k.util;
using CSJ2K.j2k.io;
using CSJ2K.j2k;
namespace CSJ2K.j2k.entropy.encoder
{
        
        /// <summary> This class implements the JPEG 2000 entropy coder, which codes stripes in
        /// code-blocks. This entropy coding engine can function in a single-threaded
        /// mode where one code-block is encoded at a time, or in a multi-threaded mode
        /// where multiple code-blocks are entropy coded in parallel. The interface
        /// presented by this class is the same in both modes.
        /// 
        /// <p>The number of threads used by this entropy coder is specified by the
        /// "jj2000.j2k.entropy.encoder.StdEntropyCoder.nthreads" Java system
        /// property. If set to "0" the single threaded implementation is used. If set
        /// to 'n' ('n' larger than 0) then 'n' extra threads are started by this class
        /// which are used to encode the code-blocks in parallel (i.e. ideally 'n'
        /// code-blocks will be encoded in parallel at a time). On multiprocessor
        /// machines under a "native threads" Java Virtual Machine implementation each
        /// one of these threads can run on a separate processor speeding up the
        /// encoding time. By default the single-threaded implementation is used. The
        /// multi-threaded implementation currently assumes that the vast majority of
        /// consecutive calls to 'getNextCodeBlock()' will be done on the same
        /// component. If this is not the case, the speed-up that can be expected on
        /// multiprocessor machines might be significantly decreased.</p>
        /// 
        /// <p>The code-blocks are rectangular, with dimensions which must be powers of
        /// 2. Each dimension has to be no smaller than 4 and no larger than 256. The
        /// product of the two dimensions (i.e. area of the code-block) may not exceed
        /// 4096.</p>
        /// 
        /// <p>Context 0 of the MQ-coder is used as the uniform one (uniform,
        /// non-adaptive probability distribution). Context 1 is used for RLC
        /// coding. Contexts 2-10 are used for zero-coding (ZC), contexts 11-15 are
        /// used for sign-coding (SC) and contexts 16-18 are used for
        /// magnitude-refinement (MR).</p>
        /// 
        /// <p>This implementation buffers the symbols and calls the MQ coder only once
        /// per stripe and per coding pass, to reduce the method call overhead.</p>
        /// 
        /// <p>This implementation also provides some timing features. They can be
        /// enabled by setting the 'DO_TIMING' constant of this class to true and
        /// recompiling. The timing uses the 'System.currentTimeMillis()' Java API
        /// call, which returns wall clock time, not the actual CPU time used. The
        /// timing results will be printed on the message output. Since the times
        /// reported are wall clock times and not CPU usage times they can not be added
        /// to find the total used time (i.e. some time might be counted in several
        /// places). When timing is disabled ('DO_TIMING' is false) there is no penalty
        /// if the compiler performs some basic optimizations. Even if not the penalty
        /// should be negligeable.</p>
        /// 
        /// <p>The source module must implement the CBlkQuantDataSrcEnc interface and
        /// code-block's data is received in a CBlkWTData instance. This modules sends
        /// code-block's information in a CBlkRateDistStats instance.</p>
        /// 
        /// </summary>
        /// <seealso cref="CBlkQuantDataSrcEnc">
        /// </seealso>
        /// <seealso cref="CBlkWTData">
        /// </seealso>
        /// <seealso cref="CBlkRateDistStats">
        /// 
        /// </seealso>
        public class StdEntropyCoder:EntropyCoder
        {
                
                /// <summary>Whether to collect timing information or not: false. Used as a compile 
                /// time directive. 
                /// </summary>
                private const bool DO_TIMING = false;
                
                /// <summary>The cumulative wall time for the entropy coding engine, for each
                /// component. In the single-threaded implementation it is the total time,
                /// in the multi-threaded implementation it is the time spent managing the
                /// compressor threads only. 
                /// </summary>
                //private long[] time;
                
                /// <summary>The Java system property name for the number of threads to use:
                /// jj2000.j2k.entropy.encoder.StdEntropyCoder.nthreads 
                /// </summary>
                public const System.String THREADS_PROP_NAME = "jj2000.j2k.entropy.encoder.StdEntropyCoder.nthreads";
                
                /// <summary>The default value for the property in THREADS_PROP_NAME: 0 </summary>
                public const System.String DEF_THREADS_NUM = "0";
                
                /// <summary>The increase in priority for the compressor threads, currently 3. The
                /// compressor threads will have a priority of THREADS_PRIORITY_INC more
                /// than the priority of the thread calling this class constructor. Used
                /// only in the multi-threaded implementation. 
                /// </summary>
                public const int THREADS_PRIORITY_INC = 0;
                
                /// <summary>The pool of threads, for the threaded implementation. It is null, if
                /// non threaded implementation is used 
                /// </summary>
                private ThreadPool tPool;
                
                /// <summary>The queue of idle compressors. Used in multithreaded
                /// implementation only 
                /// </summary>
                private System.Collections.ArrayList idleComps;
                
                /// <summary>The queue of completed compressors, for each component. Used
                /// in multithreaded implementation only. 
                /// </summary>
                private System.Collections.ArrayList[] completedComps;
                
                /// <summary>The number of busy compressors, for each component. Used in
                /// multithreaded implementation only. 
                /// </summary>
                private int[] nBusyComps;
                
                /// <summary>A flag indicating for each component if all the code-blocks of the *
                /// current tile have been returned. Used in multithreaded implementation
                /// only. 
                /// </summary>
                private bool[] finishedTileComponent;
                
                /// <summary>The MQ coder used, for each thread </summary>
                private MQCoder[] mqT;
                
                /// <summary>The raw bit output used, for each thread </summary>
                private BitToByteOutput[] boutT;
                
                /// <summary>The output stream used, for each thread </summary>
                private ByteOutputBuffer[] outT;
                
                /// <summary>The code-block size specifications </summary>
                private CBlkSizeSpec cblks;
                
                /// <summary>The precinct partition specifications </summary>
                private PrecinctSizeSpec pss;
                
                /// <summary>By-pass mode specifications </summary>
                public StringSpec bms;
                
                /// <summary>MQ reset specifications </summary>
                public StringSpec mqrs;
                
                /// <summary>Regular termination specifications </summary>
                public StringSpec rts;
                
                /// <summary>Causal stripes specifications </summary>
                public StringSpec css;
                
                /// <summary>Error resilience segment symbol use specifications </summary>
                public StringSpec sss;
                
                /// <summary>The length calculation specifications </summary>
                public StringSpec lcs;
                
                /// <summary>The termination type specifications </summary>
                public StringSpec tts;
                
                /// <summary>The options that are turned on, as flag bits. One element for each
                /// tile-component. The options are 'OPT_TERM_PASS', 'OPT_RESET_MQ',
                /// 'OPT_VERT_STR_CAUSAL', 'OPT_BYPASS' and 'OPT_SEG_SYMBOLS' as defined in
                /// the StdEntropyCoderOptions interface
                /// 
                /// </summary>
                /// <seealso cref="StdEntropyCoderOptions">
                /// 
                /// </seealso>
                private int[][] opts = null;
                
                /// <summary>The length calculation type for each tile-component </summary>
                private int[][] lenCalc = null;
                
                /// <summary>The termination type for each tile-component </summary>
                private int[][] tType = null;
                
                /// <summary>Number of bits used for the Zero Coding lookup table </summary>
                private const int ZC_LUT_BITS = 8;
                
                /// <summary>Zero Coding context lookup tables for the LH global orientation </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'ZC_LUT_LH '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int[] ZC_LUT_LH = new int[1 << ZC_LUT_BITS];
                
                /// <summary>Zero Coding context lookup tables for the HL global orientation </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'ZC_LUT_HL '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int[] ZC_LUT_HL = new int[1 << ZC_LUT_BITS];
                
                /// <summary>Zero Coding context lookup tables for the HH global orientation </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'ZC_LUT_HH '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int[] ZC_LUT_HH = new int[1 << ZC_LUT_BITS];
                
                /// <summary>Number of bits used for the Sign Coding lookup table </summary>
                private const int SC_LUT_BITS = 9;
                
                /// <summary>Sign Coding context lookup table. The index into the table is a 9 bit
                /// index, which correspond the the value in the 'state' array shifted by
                /// 'SC_SHIFT'. Bits 8-5 are the signs of the horizontal-left,
                /// horizontal-right, vertical-up and vertical-down neighbors,
                /// respectively. Bit 4 is not used (0 or 1 makes no difference). Bits 3-0
                /// are the significance of the horizontal-left, horizontal-right,
                /// vertical-up and vertical-down neighbors, respectively. The least 4 bits
                /// of the value in the lookup table define the context number and the sign
                /// bit defines the "sign predictor". 
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'SC_LUT '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int[] SC_LUT = new int[1 << SC_LUT_BITS];
                
                /// <summary>The mask to obtain the context index from the 'SC_LUT' </summary>
                private const int SC_LUT_MASK = (1 << 4) - 1;
                
                /// <summary>The shift to obtain the sign predictor from the 'SC_LUT'. It must be
                /// an unsigned shift. 
                /// </summary>
                private const int SC_SPRED_SHIFT = 31;
                
                /// <summary>The sign bit for int data </summary>
                private const int INT_SIGN_BIT = 1 << 31;
                
                /// <summary>The number of bits used for the Magnitude Refinement lookup table </summary>
                private const int MR_LUT_BITS = 9;
                
                /// <summary>Magnitude Refinement context lookup table </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'MR_LUT '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int[] MR_LUT = new int[1 << MR_LUT_BITS];
                
                /// <summary>The number of contexts used </summary>
                private const int NUM_CTXTS = 19;
                
                /// <summary>The RLC context </summary>
                private const int RLC_CTXT = 1;
                
                /// <summary>The UNIFORM context (with a uniform probability distribution which
                /// does not adapt) 
                /// </summary>
                private const int UNIF_CTXT = 0;
                
                /// <summary>The initial states for the MQ coder </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'MQ_INIT'. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int[] MQ_INIT = new int[]{46, 3, 4, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0};
                
                /// <summary>The 4 bits of the error resilience segmentation symbol (1010) </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'SEG_SYMBOLS'. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int[] SEG_SYMBOLS = new int[]{1, 0, 1, 0};
                
                /// <summary>The 4 contexts for the error resilience segmentation symbol (always
                /// the UNIFORM context, UNIF_CTXT) 
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'SEG_SYMB_CTXTS '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int[] SEG_SYMB_CTXTS = new int[]{UNIF_CTXT, UNIF_CTXT, UNIF_CTXT, UNIF_CTXT};
                
                /// <summary> The state array for each thread. Each element of the state array stores
                /// the state of two coefficients. The lower 16 bits store the state of a
                /// coefficient in row 'i' and column 'j', while the upper 16 bits store
                /// the state of a coefficient in row 'i+1' and column 'j'. The 'i' row is
                /// either the first or the third row of a stripe. This packing of the
                /// states into 32 bit words allows a faster scan of all coefficients on
                /// each coding pass and diminished the amount of data transferred. The
                /// size of the state array is increased by 1 on each side (top, bottom,
                /// left, right) to handle boundary conditions without any special logic.
                /// 
                /// <p>The state of a coefficient is stored in the following way in the
                /// lower 16 bits, where bit 0 is the least significant bit. Bit 15 is the
                /// significance of a coefficient (0 if non-significant, 1 otherwise). Bit
                /// 14 is the visited state (i.e. if a coefficient has been coded in the
                /// significance propagation pass of the current bit-plane). Bit 13 is the
                /// "non zero-context" state (i.e. if one of the eight immediate neighbors
                /// is significant it is 1, otherwise is 0). Bits 12 to 9 store the sign of
                /// the already significant left, right, up and down neighbors (1 for
                /// negative, 0 for positive or not yet significant). Bit 8 indicates if
                /// the magnitude refinement has already been applied to the
                /// coefficient. Bits 7 to 4 store the significance of the left, right, up
                /// and down neighbors (1 for significant, 0 for non significant). Bits 3
                /// to 0 store the significance of the diagonal coefficients (up-left,
                /// up-right, down-left and down-right; 1 for significant, 0 for non
                /// significant).</p>
                /// 
                /// <p>The upper 16 bits the state is stored as in the lower 16 bits, but
                /// with the bits shifted up by 16.</p>
                /// 
                /// <p>The lower 16 bits are referred to as "row 1" ("R1") while the upper
                /// 16 bits are referred to as "row 2" ("R2").</p>
                /// 
                /// </summary>
                private int[][] stateT;
                
                /* The separation between the upper and lower bits in the state array: 16
                * */
                private const int STATE_SEP = 16;
                
                /// <summary>The flag bit for the significance in the state array, for row 1. </summary>
                private const int STATE_SIG_R1 = 1 << 15;
                
                /// <summary>The flag bit for the "visited" bit in the state array, for row 1. </summary>
                private const int STATE_VISITED_R1 = 1 << 14;
                
                /// <summary>The flag bit for the "not zero context" bit in the state array, for
                /// row 1. This bit is always the OR of bits STATE_H_L_R1, STATE_H_R_R1,
                /// STATE_V_U_R1, STATE_V_D_R1, STATE_D_UL_R1, STATE_D_UR_R1, STATE_D_DL_R1
                /// and STATE_D_DR_R1. 
                /// </summary>
                private const int STATE_NZ_CTXT_R1 = 1 << 13;
                
                /// <summary>The flag bit for the horizontal-left sign in the state array, for row
                /// 1. This bit can only be set if the STATE_H_L_R1 is also set. 
                /// </summary>
                private const int STATE_H_L_SIGN_R1 = 1 << 12;
                
                /// <summary>The flag bit for the horizontal-right sign in the state array, for
                /// row 1. This bit can only be set if the STATE_H_R_R1 is also set. 
                /// </summary>
                private const int STATE_H_R_SIGN_R1 = 1 << 11;
                
                /// <summary>The flag bit for the vertical-up sign in the state array, for row
                /// 1. This bit can only be set if the STATE_V_U_R1 is also set. 
                /// </summary>
                private const int STATE_V_U_SIGN_R1 = 1 << 10;
                
                /// <summary>The flag bit for the vertical-down sign in the state array, for row
                /// 1. This bit can only be set if the STATE_V_D_R1 is also set. 
                /// </summary>
                private const int STATE_V_D_SIGN_R1 = 1 << 9;
                
                /// <summary>The flag bit for the previous MR primitive applied in the state array,
                /// for row 1. 
                /// </summary>
                private const int STATE_PREV_MR_R1 = 1 << 8;
                
                /// <summary>The flag bit for the horizontal-left significance in the state array,
                /// for row 1. 
                /// </summary>
                private const int STATE_H_L_R1 = 1 << 7;
                
                /// <summary>The flag bit for the horizontal-right significance in the state array,
                /// for row 1. 
                /// </summary>
                private const int STATE_H_R_R1 = 1 << 6;
                
                /// <summary>The flag bit for the vertical-up significance in the state array, for
                /// row 1.  
                /// </summary>
                private const int STATE_V_U_R1 = 1 << 5;
                
                /// <summary>The flag bit for the vertical-down significance in the state array,
                /// for row 1.  
                /// </summary>
                private const int STATE_V_D_R1 = 1 << 4;
                
                /// <summary>The flag bit for the diagonal up-left significance in the state array,
                /// for row 1. 
                /// </summary>
                private const int STATE_D_UL_R1 = 1 << 3;
                
                /// <summary>The flag bit for the diagonal up-right significance in the state
                /// array, for row 1.
                /// </summary>
                private const int STATE_D_UR_R1 = 1 << 2;
                
                /// <summary>The flag bit for the diagonal down-left significance in the state
                /// array, for row 1. 
                /// </summary>
                private const int STATE_D_DL_R1 = 1 << 1;
                
                /// <summary>The flag bit for the diagonal down-right significance in the state
                /// array , for row 1.
                /// </summary>
                private const int STATE_D_DR_R1 = 1;
                
                /// <summary>The flag bit for the significance in the state array, for row 2. </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'STATE_SIG_R2 '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int STATE_SIG_R2 = STATE_SIG_R1 << STATE_SEP;
                
                /// <summary>The flag bit for the "visited" bit in the state array, for row 2. </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'STATE_VISITED_R2 '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int STATE_VISITED_R2 = STATE_VISITED_R1 << STATE_SEP;
                
                /// <summary>The flag bit for the "not zero context" bit in the state array, for
                /// row 2. This bit is always the OR of bits STATE_H_L_R2, STATE_H_R_R2,
                /// STATE_V_U_R2, STATE_V_D_R2, STATE_D_UL_R2, STATE_D_UR_R2, STATE_D_DL_R2
                /// and STATE_D_DR_R2. 
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'STATE_NZ_CTXT_R2 '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int STATE_NZ_CTXT_R2 = STATE_NZ_CTXT_R1 << STATE_SEP;
                
                /// <summary>The flag bit for the horizontal-left sign in the state array, for row
                /// 2. This bit can only be set if the STATE_H_L_R2 is also set. 
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'STATE_H_L_SIGN_R2 '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int STATE_H_L_SIGN_R2 = STATE_H_L_SIGN_R1 << STATE_SEP;
                
                /// <summary>The flag bit for the horizontal-right sign in the state array, for
                /// row 2. This bit can only be set if the STATE_H_R_R2 is also set. 
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'STATE_H_R_SIGN_R2 '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int STATE_H_R_SIGN_R2 = STATE_H_R_SIGN_R1 << STATE_SEP;
                
                /// <summary>The flag bit for the vertical-up sign in the state array, for row
                /// 2. This bit can only be set if the STATE_V_U_R2 is also set. 
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'STATE_V_U_SIGN_R2 '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int STATE_V_U_SIGN_R2 = STATE_V_U_SIGN_R1 << STATE_SEP;
                
                /// <summary>The flag bit for the vertical-down sign in the state array, for row
                /// 2. This bit can only be set if the STATE_V_D_R2 is also set. 
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'STATE_V_D_SIGN_R2 '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int STATE_V_D_SIGN_R2 = STATE_V_D_SIGN_R1 << STATE_SEP;
                
                /// <summary>The flag bit for the previous MR primitive applied in the state array,
                /// for row 2. 
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'STATE_PREV_MR_R2 '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int STATE_PREV_MR_R2 = STATE_PREV_MR_R1 << STATE_SEP;
                
                /// <summary>The flag bit for the horizontal-left significance in the state array,
                /// for row 2. 
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'STATE_H_L_R2 '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int STATE_H_L_R2 = STATE_H_L_R1 << STATE_SEP;
                
                /// <summary>The flag bit for the horizontal-right significance in the state array,
                /// for row 2. 
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'STATE_H_R_R2 '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int STATE_H_R_R2 = STATE_H_R_R1 << STATE_SEP;
                
                /// <summary>The flag bit for the vertical-up significance in the state array, for
                /// row 2.  
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'STATE_V_U_R2 '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int STATE_V_U_R2 = STATE_V_U_R1 << STATE_SEP;
                
                /// <summary>The flag bit for the vertical-down significance in the state array,
                /// for row 2.  
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'STATE_V_D_R2 '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int STATE_V_D_R2 = STATE_V_D_R1 << STATE_SEP;
                
                /// <summary>The flag bit for the diagonal up-left significance in the state array,
                /// for row 2. 
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'STATE_D_UL_R2 '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int STATE_D_UL_R2 = STATE_D_UL_R1 << STATE_SEP;
                
                /// <summary>The flag bit for the diagonal up-right significance in the state
                /// array, for row 2.
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'STATE_D_UR_R2 '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int STATE_D_UR_R2 = STATE_D_UR_R1 << STATE_SEP;
                
                /// <summary>The flag bit for the diagonal down-left significance in the state
                /// array, for row 2. 
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'STATE_D_DL_R2 '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int STATE_D_DL_R2 = STATE_D_DL_R1 << STATE_SEP;
                
                /// <summary>The flag bit for the diagonal down-right significance in the state
                /// array , for row 2.
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'STATE_D_DR_R2 '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int STATE_D_DR_R2 = STATE_D_DR_R1 << STATE_SEP;
                
                /// <summary>The mask to isolate the significance bits for row 1 and 2 of the state 
                /// array. 
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'SIG_MASK_R1R2 '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int SIG_MASK_R1R2 = STATE_SIG_R1 | STATE_SIG_R2;
                
                /// <summary>The mask to isolate the visited bits for row 1 and 2 of the state 
                /// array. 
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'VSTD_MASK_R1R2 '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int VSTD_MASK_R1R2 = STATE_VISITED_R1 | STATE_VISITED_R2;
                
                /// <summary>The mask to isolate the bits necessary to identify RLC coding state
                /// (significant, visited and non-zero context, for row 1 and 2). 
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'RLC_MASK_R1R2 '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int RLC_MASK_R1R2 = STATE_SIG_R1 | STATE_SIG_R2 | STATE_VISITED_R1 | STATE_VISITED_R2 | STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2;
                
                /// <summary>The mask to obtain the ZC_LUT index from the state information </summary>
                // This is needed because of the STATE_V_D_SIGN_R1, STATE_V_U_SIGN_R1,
                // STATE_H_R_SIGN_R1, and STATE_H_L_SIGN_R1 bits.
                private const int ZC_MASK = (1 << 8) - 1;
                
                /// <summary>The shift to obtain the SC index to 'SC_LUT' from the state
                /// information, for row 1. 
                /// </summary>
                private const int SC_SHIFT_R1 = 4;
                
                /// <summary>The shift to obtain the SC index to 'SC_LUT' from the state
                /// information, for row 2. 
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'SC_SHIFT_R2 '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int SC_SHIFT_R2 = SC_SHIFT_R1 + STATE_SEP;
                
                /// <summary>The bit mask to isolate the state bits relative to the sign coding
                /// lookup table ('SC_LUT'). 
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'SC_MASK '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int SC_MASK = (1 << SC_LUT_BITS) - 1;
                
                /// <summary>The mask to obtain the MR index to 'MR_LUT' from the 'state'
                /// information. It is to be applied after the 'MR_SHIFT'. 
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'MR_MASK '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int MR_MASK = (1 << MR_LUT_BITS) - 1;
                
                /// <summary>The number of bits used to index in the 'fm' lookup table, 7. The 'fs' 
                /// table is indexed with one less bit. 
                /// </summary>
                private const int MSE_LKP_BITS = 7;

        private const int MSE_LKP_BITS_M1 = 6;
                
                /// <summary>The number of fractional bits used to store data in the 'fm' and 'fs'
                /// lookup tables. 
                /// </summary>
                private const int MSE_LKP_FRAC_BITS = 13;
                
                /// <summary>Distortion estimation lookup table for bits coded using the sign-code
                /// (SC) primative, for lossy coding (i.e. normal). 
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'FS_LOSSY '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
        private static readonly int[] FS_LOSSY = new int[1 << MSE_LKP_BITS_M1];
                
                /// <summary>Distortion estimation lookup table for bits coded using the
                /// magnitude-refinement (MR) primative, for lossy coding (i.e. normal) 
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'FM_LOSSY '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int[] FM_LOSSY = new int[1 << MSE_LKP_BITS];
                
                /// <summary>Distortion estimation lookup table for bits coded using the sign-code
                /// (SC) primative, for lossless coding and last bit-plane. This table is
                /// different from 'fs_lossy' since when doing lossless coding the residual 
                /// distortion after the last bit-plane is coded is strictly 0. 
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'FS_LOSSLESS '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
        private static readonly int[] FS_LOSSLESS = new int[1 << MSE_LKP_BITS_M1];
                
                /// <summary>Distortion estimation lookup table for bits coded using the
                /// magnitude-refinement (MR) primative, for lossless coding and last
                /// bit-plane. This table is different from 'fs_lossless' since when doing
                /// lossless coding the residual distortion after the last bit-plane is
                /// coded is strictly 0.
                /// </summary>
                //UPGRADE_NOTE: Final was removed from the declaration of 'FM_LOSSLESS '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                private static readonly int[] FM_LOSSLESS = new int[1 << MSE_LKP_BITS];
                
                /// <summary>The buffer for distortion values (avoids reallocation for each
                /// code-block), for each thread. 
                /// </summary>
                private double[][] distbufT;
                
                /// <summary>The buffer for rate values (avoids reallocation for each
                /// code-block), for each thread. 
                /// </summary>
                private int[][] ratebufT;
                
                /// <summary>The buffer for indicating terminated passes (avoids reallocation for
                /// each code-block), for each thread. 
                /// </summary>
                private bool[][] istermbufT;
                
                /// <summary>The source code-block to entropy code (avoids reallocation for each
                /// code-block), for each thread. 
                /// </summary>
                private CBlkWTData[] srcblkT;
                
                /// <summary>Buffer for symbols to send to the MQ-coder, for each thread. Used to
                /// reduce the number of calls to the MQ coder. 
                /// </summary>
                // NOTE: The symbol buffer has not prooved to be of any great improvement
                // in encoding time, but it does not hurt. It's performance should be
                // better studied under different JVMs.
                private int[][] symbufT;
                
                /// <summary>Buffer for the contexts to use when sending buffered symbols to the
                /// MQ-coder, for each thread. Used to reduce the number of calls to the MQ
                /// coder. 
                /// </summary>
                private int[][] ctxtbufT;
                
                /// <summary>boolean used to signal if the precinct partition is used for
                /// each component and each tile.  
                /// </summary>
                private bool[][] precinctPartition;
                
                //UPGRADE_NOTE: Field 'EnclosingInstance' was added to class 'Compressor' to access its enclosing instance. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1019'"
                /// <summary> Class that takes care of running the 'compressCodeBlock()' method with
                /// thread local arguments. Used only in multithreaded implementation.
                /// 
                /// </summary>
                private class Compressor : IThreadRunnable
                {
                        private void  InitBlock(StdEntropyCoder enclosingInstance)
                        {
                                this.enclosingInstance = enclosingInstance;
                        }
                        private StdEntropyCoder enclosingInstance;
                        /// <summary> Returns the index of this compressor.
                        /// 
                        /// </summary>
                        /// <returns> The index of this compressor.
                        /// 
                        /// </returns>
                        virtual public int Idx
                        {
                                get
                                {
                                        return idx;
                                }
                                
                        }
                        public StdEntropyCoder Enclosing_Instance
                        {
                                get
                                {
                                        return enclosingInstance;
                                }
                                
                        }
                        /// <summary>The index of this compressor. Used to access thread local
                        /// variables 
                        /// </summary>
                        //UPGRADE_NOTE: Final was removed from the declaration of 'idx '. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1003'"
                        private int idx;
                        
                        /// <summary>The object where to store the compressed code-block </summary>
                        // Should be private, but some buggy JDK 1.1 compilers complain
                        internal CBlkRateDistStats ccb;
                        
                        /// <summary>The component on which to compress </summary>
                        // Should be private, but some buggy JDK 1.1 compilers complain
                        internal int c;
                        
                        /// <summary>The options bitmask to use in compression </summary>
                        // Should be private, but some buggy JDK 1.1 compilers complain
                        internal int options;
                        
                        /// <summary>The reversible flag to use in compression </summary>
                        // Should be private, but some buggy JDK 1.1 compilers complain
                        internal bool rev;
                        
                        /// <summary>The length calculation type to use in compression </summary>
                        // Should be private, but some buggy JDK 1.1 compilers complain
                        internal int lcType;
                        
                        /// <summary>The MQ termination type to use in compression </summary>
                        // Should be private, but some buggy JDK 1.1 compilers complain
                        internal int tType;
                        
                        /// <summary>The cumulative wall time for this compressor, for each
                        /// component. 
                        /// </summary>
                        //private long[] time;
                        
                        /// <summary> Creates a new compressor object with the given index.
                        /// 
                        /// </summary>
                        /// <param name="idx">The index of this compressor.
                        /// 
                        /// </param>
                        internal Compressor(StdEntropyCoder enclosingInstance, int idx)
                        {
                                InitBlock(enclosingInstance);
                                this.idx = idx;
#if DO_TIMING
                                time = new long[Enclosing_Instance.src.NumComps];
#endif
                        }
                        
                        /// <summary> Calls the 'compressCodeBlock()' method with thread local
                        /// arguments. Once completed it adds itself to the 'completedComps[c]' 
                        /// stack, where 'c' is the component for which this compressor is
                        /// running. This last step occurs even if exceptions are thrown by the 
                        /// 'compressCodeBlock()' method.
                        /// 
                        /// </summary>
                        public virtual void  Run()
                        {
                                // Start the code-block compression
                                try
                {
#if DO_TIMING
                                        long stime = 0L;
                                        stime = (System.DateTime.Now.Ticks - 621355968000000000) / 10000;
#endif
                    CSJ2K.j2k.entropy.encoder.StdEntropyCoder.compressCodeBlock(c, ccb, Enclosing_Instance.srcblkT[idx], Enclosing_Instance.mqT[idx], Enclosing_Instance.boutT[idx], Enclosing_Instance.outT[idx], Enclosing_Instance.stateT[idx], Enclosing_Instance.distbufT[idx], Enclosing_Instance.ratebufT[idx], Enclosing_Instance.istermbufT[idx], Enclosing_Instance.symbufT[idx], Enclosing_Instance.ctxtbufT[idx], options, rev, lcType, tType);
#if DO_TIMING
                                        time[c] += (System.DateTime.Now.Ticks - 621355968000000000) / 10000 - stime;
#endif
                                }
                                finally
                                {
                                        // Join the queue of completed compression, even if exceptions 
                                        // occurred.
                                        Enclosing_Instance.completedComps[c].Add(this);
                                }
                        }
                }
                
                /// <summary> Instantiates a new entropy coder engine, with the specified source of
                /// data, nominal block width and height.
                /// 
                /// <p>If the 'OPT_PRED_TERM' option is given then the MQ termination must
                /// be 'TERM_PRED_ER' or an exception is thrown.</p>
                /// 
                /// </summary>
                /// <param name="src">The source of data
                /// 
                /// </param>
                /// <param name="cbks">Code-block size specifications
                /// 
                /// </param>
                /// <param name="pss">Precinct partition specifications
                /// 
                /// </param>
                /// <param name="bms">By-pass mode specifications
                /// 
                /// </param>
                /// <param name="mqrs">MQ-reset specifications
                /// 
                /// </param>
                /// <param name="rts">Regular termination specifications
                /// 
                /// </param>
                /// <param name="css">Causal stripes specifications
                /// 
                /// </param>
                /// <param name="sss">Error resolution segment symbol use specifications
                /// 
                /// </param>
                /// <param name="lcs">Length computation specifications
                /// 
                /// </param>
                /// <param name="tts">Termination type specifications
                /// 
                /// </param>
                /// <seealso cref="MQCoder">
                /// 
                /// </seealso>
                public StdEntropyCoder(CBlkQuantDataSrcEnc src, CBlkSizeSpec cblks, PrecinctSizeSpec pss, StringSpec bms, StringSpec mqrs, StringSpec rts, StringSpec css, StringSpec sss, StringSpec lcs, StringSpec tts):base(src)
                {
                        this.cblks = cblks;
                        this.pss = pss;
                        this.bms = bms;
                        this.mqrs = mqrs;
                        this.rts = rts;
                        this.css = css;
                        this.sss = sss;
                        this.lcs = lcs;
                        this.tts = tts;
                        int maxCBlkWidth, maxCBlkHeight;
                        int i; // Counter
                        int nt; // The number of threads
                        int tsl; // Size for thread structures
                        
                        // Get the biggest width/height for the code-blocks
                        maxCBlkWidth = cblks.MaxCBlkWidth;
                        maxCBlkHeight = cblks.MaxCBlkHeight;
                        
            nt = Environment.ProcessorCount;
            /*
                        // Get the number of threads to use, or default to one
                        try
                        {
                                //UPGRADE_ISSUE: Method 'java.lang.System.getProperty' was not converted. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1000_javalangSystem'"
                                nt = System.Int32.Parse(System_Renamed.getProperty(THREADS_PROP_NAME, DEF_THREADS_NUM));
                                if (nt < 0)
                                        throw new System.FormatException();
                        }
                        catch (System.FormatException e)
                        {
                                throw new System.ArgumentException("Invalid number of threads " + "for " + "entropy coding in property " + THREADS_PROP_NAME);
                        }
                        */

                        // If we do timing create necessary structures
#if DO_TIMING
                        time = new long[src.NumComps];
                        // If we are timing make sure that 'finalize' gets called.
                        //UPGRADE_ISSUE: Method 'java.lang.System.runFinalizersOnExit' was not converted. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1000_javalangSystem'"
                        // CONVERSION PROBLEM?
            //System_Renamed.runFinalizersOnExit(true);
#endif                  
                        // If using multithreaded implementation get necessasry objects
                        if (nt > 0)
                        {
                                FacilityManager.getMsgLogger().printmsg(CSJ2K.j2k.util.MsgLogger_Fields.INFO, "Using multithreaded entropy coder " + "with " + nt + " compressor threads.");
                                tsl = nt;
                                tPool = new ThreadPool(nt, (System.Int32) SupportClass.ThreadClass.Current().Priority + THREADS_PRIORITY_INC, "StdEntropyCoder");
                                idleComps = new System.Collections.ArrayList();
                                completedComps = new System.Collections.ArrayList[src.NumComps];
                                nBusyComps = new int[src.NumComps];
                                finishedTileComponent = new bool[src.NumComps];
                                for (i = src.NumComps - 1; i >= 0; i--)
                                {
                                        completedComps[i] = new System.Collections.ArrayList();
                                }
                                for (i = 0; i < nt; i++)
                                {
                                        idleComps.Add(new StdEntropyCoder.Compressor(this, i));
                                }
                        }
                        else
                        {
                                tsl = 1;
                                tPool = null;
                                idleComps = null;
                                completedComps = null;
                                nBusyComps = null;
                                finishedTileComponent = null;
                        }
                        
                        // Allocate data structures
                        outT = new ByteOutputBuffer[tsl];
                        mqT = new MQCoder[tsl];
                        boutT = new BitToByteOutput[tsl];
                        stateT = new int[tsl][];
                        for (int i2 = 0; i2 < tsl; i2++)
                        {
                                stateT[i2] = new int[(maxCBlkWidth + 2) * ((maxCBlkHeight + 1) / 2 + 2)];
                        }
                        symbufT = new int[tsl][];
                        for (int i3 = 0; i3 < tsl; i3++)
                        {
                                symbufT[i3] = new int[maxCBlkWidth * (CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT * 2 + 2)];
                        }
                        ctxtbufT = new int[tsl][];
                        for (int i4 = 0; i4 < tsl; i4++)
                        {
                                ctxtbufT[i4] = new int[maxCBlkWidth * (CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT * 2 + 2)];
                        }
                        distbufT = new double[tsl][];
                        for (int i5 = 0; i5 < tsl; i5++)
                        {
                                distbufT[i5] = new double[32 * CSJ2K.j2k.entropy.StdEntropyCoderOptions.NUM_PASSES];
                        }
                        ratebufT = new int[tsl][];
                        for (int i6 = 0; i6 < tsl; i6++)
                        {
                                ratebufT[i6] = new int[32 * CSJ2K.j2k.entropy.StdEntropyCoderOptions.NUM_PASSES];
                        }
                        istermbufT = new bool[tsl][];
                        for (int i7 = 0; i7 < tsl; i7++)
                        {
                                istermbufT[i7] = new bool[32 * CSJ2K.j2k.entropy.StdEntropyCoderOptions.NUM_PASSES];
                        }
                        srcblkT = new CBlkWTData[tsl];
                        for (i = 0; i < tsl; i++)
                        {
                                outT[i] = new ByteOutputBuffer();
                                mqT[i] = new MQCoder(outT[i], NUM_CTXTS, MQ_INIT);
                        }
                        precinctPartition = new bool[src.NumComps][];
                        for (int i8 = 0; i8 < src.NumComps; i8++)
                        {
                                precinctPartition[i8] = new bool[src.getNumTiles()];
                        }
                        
                        // Create the subband description for each component and each tile
                        //Subband sb = null;
                        Coord numTiles = null;
                        int nc = NumComps;
                        numTiles = src.getNumTiles(numTiles);
                        initTileComp(getNumTiles(), nc);
                        
                        for (int c = 0; c < nc; c++)
                        {
                                for (int tY = 0; tY < numTiles.y; tY++)
                                {
                                        for (int tX = 0; tX < numTiles.x; tX++)
                                        {
                                                precinctPartition[c][tIdx] = false;
                                        }
                                }
                        }
                }
                
#if DO_TIMING
                /// <summary> Prints the timing information, if collected, and calls 'finalize' on
                /// the super class.
                /// 
                /// </summary>
        ~StdEntropyCoder()
        {

            int c;
            System.Text.StringBuilder sb;

            if (tPool == null)
            {
                // Single threaded implementation
                sb = new System.Text.StringBuilder("StdEntropyCoder compression wall " + "clock time:");
                for (c = 0; c < time.Length; c++)
                {
                    sb.Append("\n  component ");
                    sb.Append(c);
                    sb.Append(": ");
                    sb.Append(time[c]);
                    sb.Append(" ms");
                }
                FacilityManager.getMsgLogger().printmsg(CSJ2K.j2k.util.MsgLogger_Fields.INFO, sb.ToString());
            }
            else
            {
                // Multithreaded implementation
                Compressor compr;
                MsgLogger msglog = FacilityManager.getMsgLogger();

                sb = new System.Text.StringBuilder("StdEntropyCoder manager thread " + "wall clock time:");
                for (c = 0; c < time.Length; c++)
                {
                    sb.Append("\n  component ");
                    sb.Append(c);
                    sb.Append(": ");
                    sb.Append(time[c]);
                    sb.Append(" ms");
                }
                System.Collections.IEnumerator Enum = idleComps.GetEnumerator();
                sb.Append("\nStdEntropyCoder compressor threads wall clock " + "time:");
                //UPGRADE_TODO: Method 'java.util.Enumeration.hasMoreElements' was converted to 'System.Collections.IEnumerator.MoveNext' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073_javautilEnumerationhasMoreElements'"
                while (Enum.MoveNext())
                {
                    //UPGRADE_TODO: Method 'java.util.Enumeration.nextElement' was converted to 'System.Collections.IEnumerator.Current' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073_javautilEnumerationnextElement'"
                    compr = (Compressor)(Enum.Current);
                    for (c = 0; c < time.Length; c++)
                    {
                        sb.Append("\n  compressor ");
                        sb.Append(compr.Idx);
                        sb.Append(", component ");
                        sb.Append(c);
                        sb.Append(": ");
                        sb.Append(compr.getTiming(c));
                        sb.Append(" ms");
                    }
                }
                FacilityManager.getMsgLogger().printmsg(CSJ2K.j2k.util.MsgLogger_Fields.INFO, sb.ToString());
            }

            //UPGRADE_NOTE: Call to 'super.finalize()' was removed. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1124'"
        }
#endif 

                /// <summary> Returns the code-block width for the specified tile and component.
                /// 
                /// </summary>
                /// <param name="t">The tile index
                /// 
                /// </param>
                /// <param name="c">the component index
                /// 
                /// </param>
                /// <returns> The code-block width for the specified tile and component
                /// 
                /// </returns>
                public override int getCBlkWidth(int t, int c)
                {
                        return cblks.getCBlkWidth(ModuleSpec.SPEC_TILE_COMP, t, c);
                }
                
                /// <summary> Returns the code-block height for the specified tile and component.
                /// 
                /// </summary>
                /// <param name="t">The tile index
                /// 
                /// </param>
                /// <param name="c">The component index
                /// 
                /// </param>
                /// <returns> The code-block height for the specified tile and component.
                /// 
                /// </returns>
                public override int getCBlkHeight(int t, int c)
                {
                        return cblks.getCBlkHeight(ModuleSpec.SPEC_TILE_COMP, t, c);
                }
                
                /// <summary> Returns the next coded code-block in the current tile for the specified
                /// component, as a copy (see below). The order in which code-blocks are
                /// returned is not specified. However each code-block is returned only
                /// once and all code-blocks will be returned if the method is called 'N'
                /// times, where 'N' is the number of code-blocks in the tile. After all
                /// the code-blocks have been returned for the current tile calls to this
                /// method will return 'null'.
                /// 
                /// <p>When changing the current tile (through 'setTile()' or 'nextTile()')
                /// this method will always return the first code-block, as if this method
                /// was never called before for the new current tile.</p>
                /// 
                /// <p>The data returned by this method is always a copy of the internal
                /// data of this object, if any, and it can be modified "in place" without
                /// any problems after being returned.</p>
                /// 
                /// </summary>
                /// <param name="c">The component for which to return the next code-block.
                /// 
                /// </param>
                /// <param name="ccb">If non-null this object might be used in returning the coded
                /// code-block in this or any subsequent call to this method. If null a new
                /// one is created and returned. If the 'data' array of 'cbb' is not null
                /// it may be reused to return the compressed data.
                /// 
                /// </param>
                /// <returns> The next coded code-block in the current tile for component
                /// 'n', or null if all code-blocks for the current tile have been
                /// returned.
                /// 
                /// </returns>
                /// <seealso cref="CBlkRateDistStats">
                /// 
                /// </seealso>
                public override CBlkRateDistStats getNextCodeBlock(int c, CBlkRateDistStats ccb)
                {
#if DO_TIMING
                        long stime = 0L; // Start time for timed sections
#endif
                        if (tPool == null)
                        {
                                // Use single threaded implementation
                                // Get code-block data from source
                                srcblkT[0] = src.getNextInternCodeBlock(c, srcblkT[0]);
                                
#if DO_TIMING
                            stime = (System.DateTime.Now.Ticks - 621355968000000000) / 10000;
#endif

                                if (srcblkT[0] == null)
                                {
                                        // We got all code-blocks
                                        return null;
                                }
                                // Initialize thread local variables
                                if ((opts[tIdx][c] & CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_BYPASS) != 0 && boutT[0] == null)
                                {
                                        boutT[0] = new BitToByteOutput(outT[0]);
                                }
                                // Initialize output code-block
                                if (ccb == null)
                                {
                                        ccb = new CBlkRateDistStats();
                                }
                                // Compress code-block
                                compressCodeBlock(c, ccb, srcblkT[0], mqT[0], boutT[0], outT[0], stateT[0], distbufT[0], ratebufT[0], istermbufT[0], symbufT[0], ctxtbufT[0], opts[tIdx][c], isReversible(tIdx, c), lenCalc[tIdx][c], tType[tIdx][c]);
                                
#if DO_TIMING
                                time[c] += (System.DateTime.Now.Ticks - 621355968000000000) / 10000 - stime;
#endif

                                // Return result
                                return ccb;
                        }
                        else
                        {
                                // Use multiple threaded implementation
                                int cIdx; // Compressor idx
                                Compressor compr; // Compressor
                                
#if DO_TIMING
                                stime = (System.DateTime.Now.Ticks - 621355968000000000) / 10000;
#endif
                                // Give data to all free compressors, using the current component
                                while (!finishedTileComponent[c] && !(idleComps.Count == 0))
                                {
                                        // Get an idle compressor
                                        compr = (Compressor) SupportClass.StackSupport.Pop(idleComps);
                                        cIdx = compr.Idx;
                                        // Get data for the compressor and wake it up
#if DO_TIMING
                                        time[c] += (System.DateTime.Now.Ticks - 621355968000000000) / 10000 - stime;
#endif
                                        srcblkT[cIdx] = src.getNextInternCodeBlock(c, srcblkT[cIdx]);
#if DO_TIMING
                                        stime = (System.DateTime.Now.Ticks - 621355968000000000) / 10000;
#endif
                                        if (srcblkT[cIdx] != null)
                                        {
                                                // Initialize thread local variables
                                                if ((opts[tIdx][c] & CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_BYPASS) != 0 && boutT[cIdx] == null)
                                                {
                                                        boutT[cIdx] = new BitToByteOutput(outT[cIdx]);
                                                }
                                                // Initialize output code-block and compressor thread
                                                if (ccb == null)
                                                        ccb = new CBlkRateDistStats();
                                                compr.ccb = ccb;
                                                compr.c = c;
                                                compr.options = opts[tIdx][c];
                                                compr.rev = isReversible(tIdx, c);
                                                compr.lcType = lenCalc[tIdx][c];
                                                compr.tType = tType[tIdx][c];
                                                nBusyComps[c]++;
                                                ccb = null;
                                                // Send compressor to execution in thread pool
                                                tPool.runTarget(compr, completedComps[c]);
                                        }
                                        else
                                        {
                                                // We finished with all the code-blocks in the current
                                                // tile component
                                                idleComps.Add(compr);
                                                finishedTileComponent[c] = true;
                                        }
                                }
                                // If there are threads for this component which result has not
                                // been returned yet, get it
                                if (nBusyComps[c] > 0)
                                {
                                        lock (completedComps[c])
                                        {
                                                // If no compressor is done, wait until one is
                                                if ((completedComps[c].Count == 0))
                                                {
                                                        try
                                                        {
#if DO_TIMING
                                                                time[c] += (System.DateTime.Now.Ticks - 621355968000000000) / 10000 - stime;
#endif
                                                                System.Threading.Monitor.Wait(completedComps[c]);
#if DO_TIMING
                                                                stime = (System.DateTime.Now.Ticks - 621355968000000000) / 10000;
#endif
                                                        }
                                                        catch (System.Threading.ThreadInterruptedException)
                                                        {
                                                        }
                                                }
                                                // Remove the thread from the completed queue and put it
                                                // on the idle queue
                                                compr = (Compressor) SupportClass.StackSupport.Pop(completedComps[c]);
                                                cIdx = compr.Idx;
                                                nBusyComps[c]--;
                                                idleComps.Add(compr);
                                                // Check targets error condition
                                                tPool.checkTargetErrors();
                                                // Get the result of compression and return that.
#if DO_TIMING
                                                time[c] += (System.DateTime.Now.Ticks - 621355968000000000) / 10000 - stime;
#endif
                                                return compr.ccb;
                                        }
                                }
                                else
                                {
                                        // Check targets error condition
                                        tPool.checkTargetErrors();
                                        // Printing timing info if necessary
#if DO_TIMING
                                        time[c] += (System.DateTime.Now.Ticks - 621355968000000000) / 10000 - stime;
#endif
                                        // Nothing is running => no more code-blocks
                                        return null;
                                }
                        }
                }
                
                /// <summary> Changes the current tile, given the new indexes. An
                /// IllegalArgumentException is thrown if the indexes do not correspond to
                /// a valid tile.
                /// 
                /// <p>This default implementation just changes the tile in the source.</p>
                /// 
                /// </summary>
                /// <param name="x">The horizontal index of the tile.
                /// 
                /// </param>
                /// <param name="y">The vertical index of the new tile.
                /// 
                /// </param>
                public override void  setTile(int x, int y)
                {
                        base.setTile(x, y);
                        // Reset the tile specific variables
                        if (finishedTileComponent != null)
                        {
                                for (int c = src.NumComps - 1; c >= 0; c--)
                                {
                                        finishedTileComponent[c] = false;
                                }
                        }
                }
                
                /// <summary> Advances to the next tile, in standard scan-line order (by rows then
                /// columns). An NoNextElementException is thrown if the current tile is
                /// the last one (i.e. there is no next tile).
                /// 
                /// <p>This default implementation just advances to the next tile in the
                /// source.</p>
                /// 
                /// </summary>
                public override void  nextTile()
                {
                        // Reset the tilespecific variables
                        if (finishedTileComponent != null)
                        {
                                for (int c = src.NumComps - 1; c >= 0; c--)
                                {
                                        finishedTileComponent[c] = false;
                                }
                        }
                        base.nextTile();
                }
                
                
                /// <summary> Compresses the code-block in 'srcblk' and puts the results in 'ccb',
                /// using the specified options and temporary storage.
                /// 
                /// </summary>
                /// <param name="c">The component for which to return the next code-block.
                /// 
                /// </param>
                /// <param name="ccb">The object where the compressed data will be stored. If the
                /// 'data' array of 'cbb' is not null it may be reused to return the
                /// compressed data.
                /// 
                /// </param>
                /// <param name="srcblk">The code-block data to code
                /// 
                /// </param>
                /// <param name="mq">The MQ-coder to use
                /// 
                /// </param>
                /// <param name="bout">The bit level output to use. Used only if 'OPT_BYPASS' is
                /// turned on in the 'options' argument.
                /// 
                /// </param>
                /// <param name="out">The byte buffer trough which the compressed data is stored.
                /// 
                /// </param>
                /// <param name="state">The state information for the code-block
                /// 
                /// </param>
                /// <param name="distbuf">The buffer where to store the distortion  at 
                /// the end of each coding pass.
                /// 
                /// </param>
                /// <param name="ratebuf">The buffer where to store the rate (i.e. coded lenth) at 
                /// the end of each coding pass.
                /// 
                /// </param>
                /// <param name="istermbuf">The buffer where to store the terminated flag for each 
                /// coding pass.
                /// 
                /// </param>
                /// <param name="symbuf">The buffer to hold symbols to send to the MQ coder
                /// 
                /// </param>
                /// <param name="ctxtbuf">A buffer to hold the contexts to use in sending the
                /// buffered symbols to the MQ coder.
                /// 
                /// </param>
                /// <param name="options">The options to use when coding this code-block
                /// 
                /// </param>
                /// <param name="rev">The reversible flag. Should be true if the source of this
                /// code-block's data is reversible.
                /// 
                /// </param>
                /// <param name="lcType">The type of length calculation to use with the MQ coder.
                /// 
                /// </param>
                /// <param name="tType">The type of termination to use with the MQ coder.
                /// 
                /// </param>
                /// <seealso cref="getNextCodeBlock">
                /// 
                /// </seealso>
                static private void  compressCodeBlock(int c, CBlkRateDistStats ccb, CBlkWTData srcblk, MQCoder mq, BitToByteOutput bout, ByteOutputBuffer out_Renamed, int[] state, double[] distbuf, int[] ratebuf, bool[] istermbuf, int[] symbuf, int[] ctxtbuf, int options, bool rev, int lcType, int tType)
                {
                        // NOTE: This method should not access any non-final instance or
                        // static variables, either directly or indirectly through other
                        // methods in order to be sure that the method is thread safe.
                        
                        int[] zc_lut; // The ZC lookup table to use
                        int skipbp; // The number of non-significant bit-planes to skip
                        int curbp; // The current magnitude bit-plane (starts at 30)
                        int[] fm; // The distortion estimation lookup table for MR
                        int[] fs; // The distortion estimation lookup table for SC
                        int lmb; // The least significant magnitude bit
                        int npass; // The number of coding passes, for R-D statistics
                        double msew; // The distortion (MSE weight) for the current bit-plane
                        double totdist; // The total cumulative distortion decrease
                        int ltpidx; // The index of the last pass which is terminated
                        
                        // Check error-resilient termination
                        if ((options & CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_PRED_TERM) != 0 && tType != MQCoder.TERM_PRED_ER)
                        {
                                throw new System.ArgumentException("Embedded error-resilient info " + "in MQ termination option " + "specified but incorrect MQ " + "termination " + "policy specified");
                        }
                        // Set MQ flags
                        mq.LenCalcType = lcType;
                        mq.TermType = tType;
                        
                        lmb = 30 - srcblk.magbits + 1;
                        // If there are more bit-planes to code than the implementation
                        // bit-depth set lmb to 0
                        lmb = (lmb < 0)?0:lmb;
                        
                        // Reset state
                        ArrayUtil.intArraySet(state, 0);
                        
                        // Find the most significant bit-plane
                        skipbp = calcSkipMSBP(srcblk, lmb);
                        
                        // Initialize output code-block
                        ccb.m = srcblk.m;
                        ccb.n = srcblk.n;
                        ccb.sb = srcblk.sb;
                        ccb.nROIcoeff = srcblk.nROIcoeff;
                        ccb.skipMSBP = skipbp;
                        if (ccb.nROIcoeff != 0)
                        {
                                ccb.nROIcp = 3 * (srcblk.nROIbp - skipbp - 1) + 1;
                        }
                        else
                        {
                                ccb.nROIcp = 0;
                        }
                        
                        // Choose correct ZC lookup table for global orientation
                        switch (srcblk.sb.orientation)
                        {
                                
                                case Subband.WT_ORIENT_HL: 
                                        zc_lut = ZC_LUT_HL;
                                        break;
                                
                                case Subband.WT_ORIENT_LL: 
                                case Subband.WT_ORIENT_LH: 
                                        zc_lut = ZC_LUT_LH;
                                        break;
                                
                                case Subband.WT_ORIENT_HH: 
                                        zc_lut = ZC_LUT_HH;
                                        break;
                                
                                default: 
                                        throw new System.ApplicationException("JJ2000 internal error");
                                
                        }
                        
                        // Loop on significant magnitude bit-planes doing the 3 passes
                        curbp = 30 - skipbp;
                        fs = FS_LOSSY;
                        fm = FM_LOSSY;
                        msew = System.Math.Pow(2, ((curbp - lmb) << 1) - MSE_LKP_FRAC_BITS) * srcblk.sb.stepWMSE * srcblk.wmseScaling;
                        totdist = 0f;
                        npass = 0;
                        ltpidx = - 1;
                        
                        // First significant bit-plane has only the pass pass
                        if (curbp >= lmb)
                        {
                                // Do we need the "lossless" 'fs' table ?
                                if (rev && curbp == lmb)
                                {
                                        fs = FM_LOSSLESS;
                                }
                                // We terminate if regular termination, last bit-plane, or next
                                // bit-plane is "raw".
                                istermbuf[npass] = (options & CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_TERM_PASS) != 0 || curbp == lmb || ((options & CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_BYPASS) != 0 && (31 - CSJ2K.j2k.entropy.StdEntropyCoderOptions.NUM_NON_BYPASS_MS_BP - skipbp) >= curbp);
                                totdist += cleanuppass(srcblk, mq, istermbuf[npass], curbp, state, fs, zc_lut, symbuf, ctxtbuf, ratebuf, npass, ltpidx, options) * msew;
                                distbuf[npass] = totdist;
                                if (istermbuf[npass])
                                        ltpidx = npass;
                                npass++;
                                msew *= 0.25;
                                curbp--;
                        }
                        // Other bit-planes have all passes
                        while (curbp >= lmb)
                        {
                                // Do we need the "lossless" 'fs' and 'fm' tables ?
                                if (rev && curbp == lmb)
                                {
                                        fs = FS_LOSSLESS;
                                        fm = FM_LOSSLESS;
                                }
                                
                                // Do the significance propagation pass
                                // We terminate if regular termination only
                                istermbuf[npass] = (options & CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_TERM_PASS) != 0;
                                if ((options & CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_BYPASS) == 0 || (31 - CSJ2K.j2k.entropy.StdEntropyCoderOptions.NUM_NON_BYPASS_MS_BP - skipbp <= curbp))
                                {
                                        // No bypass coding
                                        totdist += sigProgPass(srcblk, mq, istermbuf[npass], curbp, state, fs, zc_lut, symbuf, ctxtbuf, ratebuf, npass, ltpidx, options) * msew;
                                }
                                else
                                {
                                        // Bypass ("raw") coding
                                        bout.PredTerm = (options & CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_PRED_TERM) != 0;
                                        totdist += rawSigProgPass(srcblk, bout, istermbuf[npass], curbp, state, fs, ratebuf, npass, ltpidx, options) * msew;
                                }
                                distbuf[npass] = totdist;
                                if (istermbuf[npass])
                                        ltpidx = npass;
                                npass++;
                                
                                // Do the magnitude refinement pass
                                // We terminate if regular termination or bypass ("raw") coding
                                istermbuf[npass] = (options & CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_TERM_PASS) != 0 || ((options & CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_BYPASS) != 0 && (31 - CSJ2K.j2k.entropy.StdEntropyCoderOptions.NUM_NON_BYPASS_MS_BP - skipbp > curbp));
                                if ((options & CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_BYPASS) == 0 || (31 - CSJ2K.j2k.entropy.StdEntropyCoderOptions.NUM_NON_BYPASS_MS_BP - skipbp <= curbp))
                                {
                                        // No bypass coding
                                        totdist += magRefPass(srcblk, mq, istermbuf[npass], curbp, state, fm, symbuf, ctxtbuf, ratebuf, npass, ltpidx, options) * msew;
                                }
                                else
                                {
                                        // Bypass ("raw") coding
                                        bout.PredTerm = (options & CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_PRED_TERM) != 0;
                                        totdist += rawMagRefPass(srcblk, bout, istermbuf[npass], curbp, state, fm, ratebuf, npass, ltpidx, options) * msew;
                                }
                                distbuf[npass] = totdist;
                                if (istermbuf[npass])
                                        ltpidx = npass;
                                npass++;
                                
                                // Do the clenup pass
                                // We terminate if regular termination, last bit-plane, or next
                                // bit-plane is "raw".
                                istermbuf[npass] = (options & CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_TERM_PASS) != 0 || curbp == lmb || ((options & CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_BYPASS) != 0 && (31 - CSJ2K.j2k.entropy.StdEntropyCoderOptions.NUM_NON_BYPASS_MS_BP - skipbp) >= curbp);
                                totdist += cleanuppass(srcblk, mq, istermbuf[npass], curbp, state, fs, zc_lut, symbuf, ctxtbuf, ratebuf, npass, ltpidx, options) * msew;
                                distbuf[npass] = totdist;
                                
                                if (istermbuf[npass])
                                        ltpidx = npass;
                                npass++;
                                
                                // Goto next bit-plane
                                msew *= 0.25;
                                curbp--;
                        }
                        
                        // Copy compressed data and rate-distortion statistics to output
                        ccb.data = new byte[out_Renamed.size()];
                        out_Renamed.toByteArray(0, out_Renamed.size(), ccb.data, 0);
                        checkEndOfPassFF(ccb.data, ratebuf, istermbuf, npass);
                        ccb.selectConvexHull(ratebuf, distbuf, (options & (CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_BYPASS | CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_TERM_PASS)) != 0?istermbuf:null, npass, rev);
                        
                        // Reset MQ coder and bit output for next code-block
                        mq.reset();
                        if (bout != null)
                                bout.reset();
                }
                
                /// <summary> Calculates the number of magnitude bit-planes that are to be skipped,
                /// because they are non-significant. The algorithm looks for the largest
                /// magnitude and calculates the most significant bit-plane of it.
                /// 
                /// </summary>
                /// <param name="cblk">The code-block of data to scan
                /// 
                /// </param>
                /// <param name="lmb">The least significant magnitude bit in the data
                /// 
                /// </param>
                /// <returns> The number of magnitude bit-planes to skip (i.e. all zero most
                /// significant bit-planes).
                /// 
                /// </returns>
                static private int calcSkipMSBP(CBlkWTData cblk, int lmb)
                {
                        int k, kmax, mask;
                        int[] data;
                        int maxmag;
                        int mag;
                        int w, h;
                        int msbp;
                        int l;
                        
                        data = (int[]) cblk.Data;
                        w = cblk.w;
                        h = cblk.h;
                        
                        // First look for the maximum magnitude in the code-block
                        maxmag = 0;
                        // Consider only magnitude bits that are in non-fractional bit-planes.
                        mask = 0x7FFFFFFF & (~ ((1 << lmb) - 1));
                        for (l = h - 1, k = cblk.offset; l >= 0; l--)
                        {
                                for (kmax = k + w; k < kmax; k++)
                                {
                                        mag = data[k] & mask;
                                        if (mag > maxmag)
                                                maxmag = mag;
                                }
                                k += cblk.scanw - w;
                        }
                        // Now calculate the number of all zero most significant
                        // bit-planes for the maximum magnitude.
                        msbp = 30;
                        do 
                        {
                                if (((1 << msbp) & maxmag) != 0)
                                        break;
                                msbp--;
                        }
                        while (msbp >= lmb);
                        
                        // Return the number of non-significant bit-planes to skip
                        return 30 - msbp;
                }
                
                /// <summary> Performs the significance propagation pass on the specified data and
                /// bit-plane. It codes all insignificant samples which have, at least, one
                /// of its immediate eight neighbors already significant, using the ZC and
                /// SC primitives as needed. It toggles the "visited" state bit to 1 for
                /// all those samples.
                /// 
                /// </summary>
                /// <param name="srcblk">The code-block data to code
                /// 
                /// </param>
                /// <param name="mq">The MQ-coder to use
                /// 
                /// </param>
                /// <param name="doterm">If true it performs an MQ-coder termination after the end
                /// of the pass
                /// 
                /// </param>
                /// <param name="bp">The bit-plane to code
                /// 
                /// </param>
                /// <param name="state">The state information for the code-block
                /// 
                /// </param>
                /// <param name="fs">The distortion estimation lookup table for SC
                /// 
                /// </param>
                /// <param name="zc_lut">The ZC lookup table to use in ZC.
                /// 
                /// </param>
                /// <param name="symbuf">The buffer to hold symbols to send to the MQ coder
                /// 
                /// </param>
                /// <param name="ctxtbuf">A buffer to hold the contexts to use in sending the
                /// buffered symbols to the MQ coder.
                /// 
                /// </param>
                /// <param name="ratebuf">The buffer where to store the rate (i.e. coded lenth) at 
                /// the end of this coding pass.
                /// 
                /// </param>
                /// <param name="pidx">The coding pass index. Is the index in the 'ratebuf' array
                /// where to store the coded length after this coding pass.
                /// 
                /// </param>
                /// <param name="ltpidx">The index of the last pass that was terminated, or
                /// negative if none.
                /// 
                /// </param>
                /// <param name="options">The bitmask of entropy coding options to apply to the
                /// code-block
                /// 
                /// </param>
                /// <returns> The decrease in distortion for this pass, in the fixed-point
                /// normalized representation of the 'FS_LOSSY' and 'FS_LOSSLESS' tables.
                /// 
                /// </returns>
                static private int sigProgPass(CBlkWTData srcblk, MQCoder mq, bool doterm, int bp, int[] state, int[] fs, int[] zc_lut, int[] symbuf, int[] ctxtbuf, int[] ratebuf, int pidx, int ltpidx, int options)
                {
                        int j, sj; // The state index for line and stripe
                        int k, sk; // The data index for line and stripe
                        int nsym = 0; // Symbol counter for symbol and context buffers
                        int dscanw; // The data scan-width
                        int sscanw; // The state and packed state scan-width
                        int jstep; // Stripe to stripe step for 'sj'
                        int kstep; // Stripe to stripe step for 'sk'
                        int stopsk; // The loop limit on the variable sk
                        int csj; // Local copy (i.e. cached) of 'state[j]'
                        int mask; // The mask for the current bit-plane
                        int sym; // The symbol to code
                        int ctxt; // The context to use
                        int[] data; // The data buffer
                        int dist; // The distortion reduction for this pass
                        int shift; // Shift amount for distortion
                        int upshift; // Shift left amount for distortion
                        int downshift; // Shift right amount for distortion
                        int normval; // The normalized sample magnitude value
                        int s; // The stripe index
                        bool causal; // Flag to indicate if stripe-causal context
                        // formation is to be used
                        int nstripes; // The number of stripes in the code-block
                        int sheight; // Height of the current stripe
                        int off_ul, off_ur, off_dr, off_dl; // offsets
                        
                        // Initialize local variables
                        dscanw = srcblk.scanw;
                        sscanw = srcblk.w + 2;
                        jstep = sscanw * CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT / 2 - srcblk.w;
                        kstep = dscanw * CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT - srcblk.w;
                        mask = 1 << bp;
                        data = (int[]) srcblk.Data;
                        nstripes = (srcblk.h + CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT - 1) / CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT;
                        dist = 0;
                        // We use the MSE_LKP_BITS-1 bits below the bit just coded for
                        // distortion estimation.
                        shift = bp - MSE_LKP_BITS_M1;
                        upshift = (shift >= 0)?0:- shift;
                        downshift = (shift <= 0)?0:shift;
                        causal = (options & CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_VERT_STR_CAUSAL) != 0;
                        
                        // Pre-calculate offsets in 'state' for diagonal neighbors
                        off_ul = - sscanw - 1; // up-left
                        off_ur = - sscanw + 1; // up-right
                        off_dr = sscanw + 1; // down-right
                        off_dl = sscanw - 1; // down-left
                        
                        // Code stripe by stripe
                        sk = srcblk.offset;
                        sj = sscanw + 1;
                        for (s = nstripes - 1; s >= 0; s--, sk += kstep, sj += jstep)
                        {
                                sheight = (s != 0)?CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT:srcblk.h - (nstripes - 1) * CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT;
                                stopsk = sk + srcblk.w;
                                // Scan by set of 1 stripe column at a time
                                for (nsym = 0; sk < stopsk; sk++, sj++)
                                {
                                        // Do half top of column
                                        j = sj;
                                        csj = state[j];
                                        // If any of the two samples is not significant and has a
                                        // non-zero context (i.e. some neighbor is significant) we can 
                                        // not skip them
                                        if ((((~ csj) & (csj << 2)) & SIG_MASK_R1R2) != 0)
                                        {
                                                k = sk;
                                                // Scan first row
                                                if ((csj & (STATE_SIG_R1 | STATE_NZ_CTXT_R1)) == STATE_NZ_CTXT_R1)
                                                {
                                                        // Apply zero coding
                                                        ctxtbuf[nsym] = zc_lut[csj & ZC_MASK];
                                                        if ((symbuf[nsym++] = SupportClass.URShift((data[k] & mask), bp)) != 0)
                                                        {
                                                                // Became significant
                                                                // Apply sign coding
                                                                sym = SupportClass.URShift(data[k], 31);
                                                                ctxt = SC_LUT[(SupportClass.URShift(csj, SC_SHIFT_R1)) & SC_MASK];
                                                                symbuf[nsym] = sym ^ (SupportClass.URShift(ctxt, SC_SPRED_SHIFT));
                                                                ctxtbuf[nsym++] = ctxt & SC_LUT_MASK;
                                                                // Update state information (significant bit,
                                                                // visited bit, neighbor significant bit of
                                                                // neighbors, non zero context of neighbors, sign
                                                                // of neighbors)
                                                                if (!causal)
                                                                {
                                                                        // If in causal mode do not change contexts of 
                                                                        // previous stripe.
                                                                        state[j + off_ul] |= STATE_NZ_CTXT_R2 | STATE_D_DR_R2;
                                                                        state[j + off_ur] |= STATE_NZ_CTXT_R2 | STATE_D_DL_R2;
                                                                }
                                                                // Update sign state information of neighbors
                                                                if (sym != 0)
                                                                {
                                                                        csj |= STATE_SIG_R1 | STATE_VISITED_R1 | STATE_NZ_CTXT_R2 | STATE_V_U_R2 | STATE_V_U_SIGN_R2;
                                                                        if (!causal)
                                                                        {
                                                                                // If in causal mode do not change
                                                                                // contexts of previous stripe.
                                                                                state[j - sscanw] |= STATE_NZ_CTXT_R2 | STATE_V_D_R2 | STATE_V_D_SIGN_R2;
                                                                        }
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_L_R1 | STATE_H_L_SIGN_R1 | STATE_D_UL_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_R_R1 | STATE_H_R_SIGN_R1 | STATE_D_UR_R2;
                                                                }
                                                                else
                                                                {
                                                                        csj |= STATE_SIG_R1 | STATE_VISITED_R1 | STATE_NZ_CTXT_R2 | STATE_V_U_R2;
                                                                        if (!causal)
                                                                        {
                                                                                // If in causal mode do not change
                                                                                // contexts of previous stripe.
                                                                                state[j - sscanw] |= STATE_NZ_CTXT_R2 | STATE_V_D_R2;
                                                                        }
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_L_R1 | STATE_D_UL_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_R_R1 | STATE_D_UR_R2;
                                                                }
                                                                // Update distortion
                                                                normval = (data[k] >> downshift) << upshift;
                                dist += fs[normval & ((1 << MSE_LKP_BITS_M1) - 1)];
                                                        }
                                                        else
                                                        {
                                                                csj |= STATE_VISITED_R1;
                                                        }
                                                }
                                                if (sheight < 2)
                                                {
                                                        state[j] = csj;
                                                        continue;
                                                }
                                                // Scan second row
                                                if ((csj & (STATE_SIG_R2 | STATE_NZ_CTXT_R2)) == STATE_NZ_CTXT_R2)
                                                {
                                                        k += dscanw;
                                                        // Apply zero coding
                                                        ctxtbuf[nsym] = zc_lut[(SupportClass.URShift(csj, STATE_SEP)) & ZC_MASK];
                                                        if ((symbuf[nsym++] = SupportClass.URShift((data[k] & mask), bp)) != 0)
                                                        {
                                                                // Became significant
                                                                // Apply sign coding
                                                                sym = SupportClass.URShift(data[k], 31);
                                                                ctxt = SC_LUT[(SupportClass.URShift(csj, SC_SHIFT_R2)) & SC_MASK];
                                                                symbuf[nsym] = sym ^ (SupportClass.URShift(ctxt, SC_SPRED_SHIFT));
                                                                ctxtbuf[nsym++] = ctxt & SC_LUT_MASK;
                                                                // Update state information (significant bit,
                                                                // visited bit, neighbor significant bit of
                                                                // neighbors, non zero context of neighbors, sign
                                                                // of neighbors)
                                                                state[j + off_dl] |= STATE_NZ_CTXT_R1 | STATE_D_UR_R1;
                                                                state[j + off_dr] |= STATE_NZ_CTXT_R1 | STATE_D_UL_R1;
                                                                // Update sign state information of neighbors
                                                                if (sym != 0)
                                                                {
                                                                        csj |= STATE_SIG_R2 | STATE_VISITED_R2 | STATE_NZ_CTXT_R1 | STATE_V_D_R1 | STATE_V_D_SIGN_R1;
                                                                        state[j + sscanw] |= STATE_NZ_CTXT_R1 | STATE_V_U_R1 | STATE_V_U_SIGN_R1;
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DL_R1 | STATE_H_L_R2 | STATE_H_L_SIGN_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DR_R1 | STATE_H_R_R2 | STATE_H_R_SIGN_R2;
                                                                }
                                                                else
                                                                {
                                                                        csj |= STATE_SIG_R2 | STATE_VISITED_R2 | STATE_NZ_CTXT_R1 | STATE_V_D_R1;
                                                                        state[j + sscanw] |= STATE_NZ_CTXT_R1 | STATE_V_U_R1;
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DL_R1 | STATE_H_L_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DR_R1 | STATE_H_R_R2;
                                                                }
                                                                // Update distortion
                                                                normval = (data[k] >> downshift) << upshift;
                                dist += fs[normval & ((1 << MSE_LKP_BITS_M1) - 1)];
                                                        }
                                                        else
                                                        {
                                                                csj |= STATE_VISITED_R2;
                                                        }
                                                }
                                                state[j] = csj;
                                        }
                                        // Do half bottom of column
                                        if (sheight < 3)
                                                continue;
                                        j += sscanw;
                                        csj = state[j];
                                        // If any of the two samples is not significant and has a
                                        // non-zero context (i.e. some neighbor is significant) we can 
                                        // not skip them
                                        if ((((~ csj) & (csj << 2)) & SIG_MASK_R1R2) != 0)
                                        {
                                                k = sk + (dscanw << 1);
                                                // Scan first row
                                                if ((csj & (STATE_SIG_R1 | STATE_NZ_CTXT_R1)) == STATE_NZ_CTXT_R1)
                                                {
                                                        // Apply zero coding
                                                        ctxtbuf[nsym] = zc_lut[csj & ZC_MASK];
                                                        if ((symbuf[nsym++] = SupportClass.URShift((data[k] & mask), bp)) != 0)
                                                        {
                                                                // Became significant
                                                                // Apply sign coding
                                                                sym = SupportClass.URShift(data[k], 31);
                                                                ctxt = SC_LUT[(SupportClass.URShift(csj, SC_SHIFT_R1)) & SC_MASK];
                                                                symbuf[nsym] = sym ^ (SupportClass.URShift(ctxt, SC_SPRED_SHIFT));
                                                                ctxtbuf[nsym++] = ctxt & SC_LUT_MASK;
                                                                // Update state information (significant bit,
                                                                // visited bit, neighbor significant bit of
                                                                // neighbors, non zero context of neighbors, sign
                                                                // of neighbors)
                                                                state[j + off_ul] |= STATE_NZ_CTXT_R2 | STATE_D_DR_R2;
                                                                state[j + off_ur] |= STATE_NZ_CTXT_R2 | STATE_D_DL_R2;
                                                                // Update sign state information of neighbors
                                                                if (sym != 0)
                                                                {
                                                                        csj |= STATE_SIG_R1 | STATE_VISITED_R1 | STATE_NZ_CTXT_R2 | STATE_V_U_R2 | STATE_V_U_SIGN_R2;
                                                                        state[j - sscanw] |= STATE_NZ_CTXT_R2 | STATE_V_D_R2 | STATE_V_D_SIGN_R2;
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_L_R1 | STATE_H_L_SIGN_R1 | STATE_D_UL_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_R_R1 | STATE_H_R_SIGN_R1 | STATE_D_UR_R2;
                                                                }
                                                                else
                                                                {
                                                                        csj |= STATE_SIG_R1 | STATE_VISITED_R1 | STATE_NZ_CTXT_R2 | STATE_V_U_R2;
                                                                        state[j - sscanw] |= STATE_NZ_CTXT_R2 | STATE_V_D_R2;
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_L_R1 | STATE_D_UL_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_R_R1 | STATE_D_UR_R2;
                                                                }
                                                                // Update distortion
                                                                normval = (data[k] >> downshift) << upshift;
                                dist += fs[normval & ((1 << MSE_LKP_BITS_M1) - 1)];
                                                        }
                                                        else
                                                        {
                                                                csj |= STATE_VISITED_R1;
                                                        }
                                                }
                                                if (sheight < 4)
                                                {
                                                        state[j] = csj;
                                                        continue;
                                                }
                                                // Scan second row
                                                if ((csj & (STATE_SIG_R2 | STATE_NZ_CTXT_R2)) == STATE_NZ_CTXT_R2)
                                                {
                                                        k += dscanw;
                                                        // Apply zero coding
                                                        ctxtbuf[nsym] = zc_lut[(SupportClass.URShift(csj, STATE_SEP)) & ZC_MASK];
                                                        if ((symbuf[nsym++] = SupportClass.URShift((data[k] & mask), bp)) != 0)
                                                        {
                                                                // Became significant
                                                                // Apply sign coding
                                                                sym = SupportClass.URShift(data[k], 31);
                                                                ctxt = SC_LUT[(SupportClass.URShift(csj, SC_SHIFT_R2)) & SC_MASK];
                                                                symbuf[nsym] = sym ^ (SupportClass.URShift(ctxt, SC_SPRED_SHIFT));
                                                                ctxtbuf[nsym++] = ctxt & SC_LUT_MASK;
                                                                // Update state information (significant bit,
                                                                // visited bit, neighbor significant bit of
                                                                // neighbors, non zero context of neighbors, sign
                                                                // of neighbors)
                                                                state[j + off_dl] |= STATE_NZ_CTXT_R1 | STATE_D_UR_R1;
                                                                state[j + off_dr] |= STATE_NZ_CTXT_R1 | STATE_D_UL_R1;
                                                                // Update sign state information of neighbors
                                                                if (sym != 0)
                                                                {
                                                                        csj |= STATE_SIG_R2 | STATE_VISITED_R2 | STATE_NZ_CTXT_R1 | STATE_V_D_R1 | STATE_V_D_SIGN_R1;
                                                                        state[j + sscanw] |= STATE_NZ_CTXT_R1 | STATE_V_U_R1 | STATE_V_U_SIGN_R1;
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DL_R1 | STATE_H_L_R2 | STATE_H_L_SIGN_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DR_R1 | STATE_H_R_R2 | STATE_H_R_SIGN_R2;
                                                                }
                                                                else
                                                                {
                                                                        csj |= STATE_SIG_R2 | STATE_VISITED_R2 | STATE_NZ_CTXT_R1 | STATE_V_D_R1;
                                                                        state[j + sscanw] |= STATE_NZ_CTXT_R1 | STATE_V_U_R1;
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DL_R1 | STATE_H_L_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DR_R1 | STATE_H_R_R2;
                                                                }
                                                                // Update distortion
                                                                normval = (data[k] >> downshift) << upshift;
                                dist += fs[normval & ((1 << MSE_LKP_BITS_M1) - 1)];
                                                        }
                                                        else
                                                        {
                                                                csj |= STATE_VISITED_R2;
                                                        }
                                                }
                                                state[j] = csj;
                                        }
                                }
                                // Code all buffered symbols
                                mq.codeSymbols(symbuf, ctxtbuf, nsym);
                        }
                        // Reset the MQ context states if we need to
                        if ((options & CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_RESET_MQ) != 0)
                        {
                                mq.resetCtxts();
                        }
                        
                        // Terminate the MQ bit stream if we need to
                        if (doterm)
                        {
                                ratebuf[pidx] = mq.terminate(); // Termination has special length
                        }
                        else
                        {
                                // Use normal length calculation
                                ratebuf[pidx] = mq.NumCodedBytes;
                        }
                        // Add length of previous segments, if any
                        if (ltpidx >= 0)
                        {
                                ratebuf[pidx] += ratebuf[ltpidx];
                        }
                        // Finish length calculation if needed
                        if (doterm)
                        {
                                mq.finishLengthCalculation(ratebuf, pidx);
                        }
                        
                        // Return the reduction in distortion
                        return dist;
                }
                
                /// <summary> Performs the significance propagation pass on the specified data and
                /// bit-plane, without using the arithmetic coder. It codes all
                /// insignificant samples which have, at least, one of its immediate eight
                /// neighbors already significant, using the ZC and SC primitives as
                /// needed. It toggles the "visited" state bit to 1 for all those samples.
                /// 
                /// <p>In this method, the arithmetic coder is bypassed, and raw bits are
                /// directly written in the bit stream (useful when distribution are close
                /// to uniform, for intance, at high bit-rates and at lossless
                /// compression).</p>
                /// 
                /// </summary>
                /// <param name="srcblk">The code-block data to code
                /// 
                /// </param>
                /// <param name="bout">The bit based output
                /// 
                /// </param>
                /// <param name="doterm">If true the bit based output is byte aligned after the
                /// end of the pass.
                /// 
                /// </param>
                /// <param name="bp">The bit-plane to code
                /// 
                /// </param>
                /// <param name="state">The state information for the code-block
                /// 
                /// </param>
                /// <param name="fs">The distortion estimation lookup table for SC
                /// 
                /// </param>
                /// <param name="ratebuf">The buffer where to store the rate (i.e. coded lenth) at 
                /// the end of this coding pass.
                /// 
                /// </param>
                /// <param name="pidx">The coding pass index. Is the index in the 'ratebuf' array
                /// where to store the coded length after this coding pass.
                /// 
                /// </param>
                /// <param name="ltpidx">The index of the last pass that was terminated, or
                /// negative if none.
                /// 
                /// </param>
                /// <param name="options">The bitmask of entropy coding options to apply to the
                /// code-block
                /// 
                /// </param>
                /// <returns> The decrease in distortion for this pass, in the fixed-point
                /// normalized representation of the 'FS_LOSSY' and 'FS_LOSSLESS' tables.
                /// 
                /// </returns>
                static private int rawSigProgPass(CBlkWTData srcblk, BitToByteOutput bout, bool doterm, int bp, int[] state, int[] fs, int[] ratebuf, int pidx, int ltpidx, int options)
                {
                        int j, sj; // The state index for line and stripe
                        int k, sk; // The data index for line and stripe
                        int dscanw; // The data scan-width
                        int sscanw; // The state scan-width
                        int jstep; // Stripe to stripe step for 'sj'
                        int kstep; // Stripe to stripe step for 'sk'
                        int stopsk; // The loop limit on the variable sk
                        int csj; // Local copy (i.e. cached) of 'state[j]'
                        int mask; // The mask for the current bit-plane
                        int nsym = 0; // Number of symbol
                        int sym; // The symbol to code
                        int[] data; // The data buffer
                        int dist; // The distortion reduction for this pass
                        int shift; // Shift amount for distortion
                        int upshift; // Shift left amount for distortion
                        int downshift; // Shift right amount for distortion
                        int normval; // The normalized sample magnitude value
                        int s; // The stripe index
                        bool causal; // Flag to indicate if stripe-causal context
                        // formation is to be used
                        int nstripes; // The number of stripes in the code-block
                        int sheight; // Height of the current stripe
                        int off_ul, off_ur, off_dr, off_dl; // offsets
                        
                        // Initialize local variables
                        dscanw = srcblk.scanw;
                        sscanw = srcblk.w + 2;
                        jstep = sscanw * CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT / 2 - srcblk.w;
                        kstep = dscanw * CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT - srcblk.w;
                        mask = 1 << bp;
                        data = (int[]) srcblk.Data;
                        nstripes = (srcblk.h + CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT - 1) / CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT;
                        dist = 0;
                        // We use the MSE_LKP_BITS-1 bits below the bit just coded for
                        // distortion estimation.
                        shift = bp - MSE_LKP_BITS_M1;
                        upshift = (shift >= 0)?0:- shift;
                        downshift = (shift <= 0)?0:shift;
                        causal = (options & CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_VERT_STR_CAUSAL) != 0;
                        
                        // Pre-calculate offsets in 'state' for neighbors
                        off_ul = - sscanw - 1; // up-left
                        off_ur = - sscanw + 1; // up-right
                        off_dr = sscanw + 1; // down-right
                        off_dl = sscanw - 1; // down-left
                        
                        // Code stripe by stripe
                        sk = srcblk.offset;
                        sj = sscanw + 1;
                        for (s = nstripes - 1; s >= 0; s--, sk += kstep, sj += jstep)
                        {
                                sheight = (s != 0)?CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT:srcblk.h - (nstripes - 1) * CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT;
                                stopsk = sk + srcblk.w;
                                // Scan by set of 1 stripe column at a time
                                for (; sk < stopsk; sk++, sj++)
                                {
                                        // Do half top of column
                                        j = sj;
                                        csj = state[j];
                                        // If any of the two samples is not significant and has a
                                        // non-zero context (i.e. some neighbor is significant) we can 
                                        // not skip them
                                        if ((((~ csj) & (csj << 2)) & SIG_MASK_R1R2) != 0)
                                        {
                                                k = sk;
                                                // Scan first row
                                                if ((csj & (STATE_SIG_R1 | STATE_NZ_CTXT_R1)) == STATE_NZ_CTXT_R1)
                                                {
                                                        // Apply zero coding
                                                        sym = SupportClass.URShift((data[k] & mask), bp);
                                                        bout.writeBit(sym);
                                                        nsym++;
                                                        if (sym != 0)
                                                        {
                                                                // Became significant
                                                                // Apply sign coding
                                                                sym = SupportClass.URShift(data[k], 31);
                                                                bout.writeBit(sym);
                                                                nsym++;
                                                                // Update state information (significant bit,
                                                                // visited bit, neighbor significant bit of
                                                                // neighbors, non zero context of neighbors, sign
                                                                // of neighbors)
                                                                if (!causal)
                                                                {
                                                                        // If in causal mode do not change contexts of 
                                                                        // previous stripe.
                                                                        state[j + off_ul] |= STATE_NZ_CTXT_R2 | STATE_D_DR_R2;
                                                                        state[j + off_ur] |= STATE_NZ_CTXT_R2 | STATE_D_DL_R2;
                                                                }
                                                                // Update sign state information of neighbors
                                                                if (sym != 0)
                                                                {
                                                                        csj |= STATE_SIG_R1 | STATE_VISITED_R1 | STATE_NZ_CTXT_R2 | STATE_V_U_R2 | STATE_V_U_SIGN_R2;
                                                                        if (!causal)
                                                                        {
                                                                                // If in causal mode do not change
                                                                                // contexts of previous stripe.
                                                                                state[j - sscanw] |= STATE_NZ_CTXT_R2 | STATE_V_D_R2 | STATE_V_D_SIGN_R2;
                                                                        }
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_L_R1 | STATE_H_L_SIGN_R1 | STATE_D_UL_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_R_R1 | STATE_H_R_SIGN_R1 | STATE_D_UR_R2;
                                                                }
                                                                else
                                                                {
                                                                        csj |= STATE_SIG_R1 | STATE_VISITED_R1 | STATE_NZ_CTXT_R2 | STATE_V_U_R2;
                                                                        if (!causal)
                                                                        {
                                                                                // If in causal mode do not change
                                                                                // contexts of previous stripe.
                                                                                state[j - sscanw] |= STATE_NZ_CTXT_R2 | STATE_V_D_R2;
                                                                        }
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_L_R1 | STATE_D_UL_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_R_R1 | STATE_D_UR_R2;
                                                                }
                                                                // Update distortion
                                                                normval = (data[k] >> downshift) << upshift;
                                dist += fs[normval & ((1 << MSE_LKP_BITS_M1) - 1)];
                                                        }
                                                        else
                                                        {
                                                                csj |= STATE_VISITED_R1;
                                                        }
                                                }
                                                if (sheight < 2)
                                                {
                                                        state[j] = csj;
                                                        continue;
                                                }
                                                // Scan second row
                                                if ((csj & (STATE_SIG_R2 | STATE_NZ_CTXT_R2)) == STATE_NZ_CTXT_R2)
                                                {
                                                        k += dscanw;
                                                        // Apply zero coding
                                                        sym = SupportClass.URShift((data[k] & mask), bp);
                                                        bout.writeBit(sym);
                                                        nsym++;
                                                        if (sym != 0)
                                                        {
                                                                // Became significant
                                                                // Apply sign coding
                                                                sym = SupportClass.URShift(data[k], 31);
                                                                bout.writeBit(sym);
                                                                nsym++;
                                                                // Update state information (significant bit,
                                                                // visited bit, neighbor significant bit of
                                                                // neighbors, non zero context of neighbors, sign
                                                                // of neighbors)
                                                                state[j + off_dl] |= STATE_NZ_CTXT_R1 | STATE_D_UR_R1;
                                                                state[j + off_dr] |= STATE_NZ_CTXT_R1 | STATE_D_UL_R1;
                                                                // Update sign state information of neighbors
                                                                if (sym != 0)
                                                                {
                                                                        csj |= STATE_SIG_R2 | STATE_VISITED_R2 | STATE_NZ_CTXT_R1 | STATE_V_D_R1 | STATE_V_D_SIGN_R1;
                                                                        state[j + sscanw] |= STATE_NZ_CTXT_R1 | STATE_V_U_R1 | STATE_V_U_SIGN_R1;
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DL_R1 | STATE_H_L_R2 | STATE_H_L_SIGN_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DR_R1 | STATE_H_R_R2 | STATE_H_R_SIGN_R2;
                                                                }
                                                                else
                                                                {
                                                                        csj |= STATE_SIG_R2 | STATE_VISITED_R2 | STATE_NZ_CTXT_R1 | STATE_V_D_R1;
                                                                        state[j + sscanw] |= STATE_NZ_CTXT_R1 | STATE_V_U_R1;
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DL_R1 | STATE_H_L_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DR_R1 | STATE_H_R_R2;
                                                                }
                                                                // Update distortion
                                                                normval = (data[k] >> downshift) << upshift;
                                dist += fs[normval & ((1 << MSE_LKP_BITS_M1) - 1)];
                                                        }
                                                        else
                                                        {
                                                                csj |= STATE_VISITED_R2;
                                                        }
                                                }
                                                state[j] = csj;
                                        }
                                        // Do half bottom of column
                                        if (sheight < 3)
                                                continue;
                                        j += sscanw;
                                        csj = state[j];
                                        // If any of the two samples is not significant and has a
                                        // non-zero context (i.e. some neighbor is significant) we can 
                                        // not skip them
                                        if ((((~ csj) & (csj << 2)) & SIG_MASK_R1R2) != 0)
                                        {
                                                k = sk + (dscanw << 1);
                                                // Scan first row
                                                if ((csj & (STATE_SIG_R1 | STATE_NZ_CTXT_R1)) == STATE_NZ_CTXT_R1)
                                                {
                                                        sym = SupportClass.URShift((data[k] & mask), bp);
                                                        bout.writeBit(sym);
                                                        nsym++;
                                                        if (sym != 0)
                                                        {
                                                                // Became significant
                                                                // Apply sign coding
                                                                sym = SupportClass.URShift(data[k], 31);
                                                                bout.writeBit(sym);
                                                                nsym++;
                                                                // Update state information (significant bit,
                                                                // visited bit, neighbor significant bit of
                                                                // neighbors, non zero context of neighbors, sign
                                                                // of neighbors)
                                                                state[j + off_ul] |= STATE_NZ_CTXT_R2 | STATE_D_DR_R2;
                                                                state[j + off_ur] |= STATE_NZ_CTXT_R2 | STATE_D_DL_R2;
                                                                // Update sign state information of neighbors
                                                                if (sym != 0)
                                                                {
                                                                        csj |= STATE_SIG_R1 | STATE_VISITED_R1 | STATE_NZ_CTXT_R2 | STATE_V_U_R2 | STATE_V_U_SIGN_R2;
                                                                        state[j - sscanw] |= STATE_NZ_CTXT_R2 | STATE_V_D_R2 | STATE_V_D_SIGN_R2;
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_L_R1 | STATE_H_L_SIGN_R1 | STATE_D_UL_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_R_R1 | STATE_H_R_SIGN_R1 | STATE_D_UR_R2;
                                                                }
                                                                else
                                                                {
                                                                        csj |= STATE_SIG_R1 | STATE_VISITED_R1 | STATE_NZ_CTXT_R2 | STATE_V_U_R2;
                                                                        state[j - sscanw] |= STATE_NZ_CTXT_R2 | STATE_V_D_R2;
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_L_R1 | STATE_D_UL_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_R_R1 | STATE_D_UR_R2;
                                                                }
                                                                // Update distortion
                                                                normval = (data[k] >> downshift) << upshift;
                                                                dist += fs[normval & ((1 << MSE_LKP_BITS_M1) - 1)];
                                                        }
                                                        else
                                                        {
                                                                csj |= STATE_VISITED_R1;
                                                        }
                                                }
                                                if (sheight < 4)
                                                {
                                                        state[j] = csj;
                                                        continue;
                                                }
                                                if ((csj & (STATE_SIG_R2 | STATE_NZ_CTXT_R2)) == STATE_NZ_CTXT_R2)
                                                {
                                                        k += dscanw;
                                                        // Apply zero coding
                                                        sym = SupportClass.URShift((data[k] & mask), bp);
                                                        bout.writeBit(sym);
                                                        nsym++;
                                                        if (sym != 0)
                                                        {
                                                                // Became significant
                                                                // Apply sign coding
                                                                sym = SupportClass.URShift(data[k], 31);
                                                                bout.writeBit(sym);
                                                                nsym++;
                                                                // Update state information (significant bit,
                                                                // visited bit, neighbor significant bit of
                                                                // neighbors, non zero context of neighbors, sign
                                                                // of neighbors)
                                                                state[j + off_dl] |= STATE_NZ_CTXT_R1 | STATE_D_UR_R1;
                                                                state[j + off_dr] |= STATE_NZ_CTXT_R1 | STATE_D_UL_R1;
                                                                // Update sign state information of neighbors
                                                                if (sym != 0)
                                                                {
                                                                        csj |= STATE_SIG_R2 | STATE_VISITED_R2 | STATE_NZ_CTXT_R1 | STATE_V_D_R1 | STATE_V_D_SIGN_R1;
                                                                        state[j + sscanw] |= STATE_NZ_CTXT_R1 | STATE_V_U_R1 | STATE_V_U_SIGN_R1;
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DL_R1 | STATE_H_L_R2 | STATE_H_L_SIGN_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DR_R1 | STATE_H_R_R2 | STATE_H_R_SIGN_R2;
                                                                }
                                                                else
                                                                {
                                                                        csj |= STATE_SIG_R2 | STATE_VISITED_R2 | STATE_NZ_CTXT_R1 | STATE_V_D_R1;
                                                                        state[j + sscanw] |= STATE_NZ_CTXT_R1 | STATE_V_U_R1;
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DL_R1 | STATE_H_L_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DR_R1 | STATE_H_R_R2;
                                                                }
                                                                // Update distortion
                                                                normval = (data[k] >> downshift) << upshift;
                                dist += fs[normval & ((1 << MSE_LKP_BITS_M1) - 1)];
                                                        }
                                                        else
                                                        {
                                                                csj |= STATE_VISITED_R2;
                                                        }
                                                }
                                                state[j] = csj;
                                        }
                                }
                        }
                        
                        // Get length and terminate if needed
                        if (doterm)
                        {
                                ratebuf[pidx] = bout.terminate();
                        }
                        else
                        {
                                ratebuf[pidx] = bout.length();
                        }
                        // Add length of previous segments, if any
                        if (ltpidx >= 0)
                        {
                                ratebuf[pidx] += ratebuf[ltpidx];
                        }
                        
                        // Return the reduction in distortion
                        return dist;
                }
                
                /// <summary> Performs the magnitude refinement pass on the specified data and
                /// bit-plane. It codes the samples which are significant and which do not
                /// have the "visited" state bit turned on, using the MR primitive. The
                /// "visited" state bit is not mofified for any samples.
                /// 
                /// </summary>
                /// <param name="srcblk">The code-block data to code
                /// 
                /// </param>
                /// <param name="mq">The MQ-coder to use
                /// 
                /// </param>
                /// <param name="doterm">If true it performs an MQ-coder termination after the end
                /// of the pass
                /// 
                /// </param>
                /// <param name="bp">The bit-plane to code
                /// 
                /// </param>
                /// <param name="state">The state information for the code-block
                /// 
                /// </param>
                /// <param name="fm">The distortion estimation lookup table for MR
                /// 
                /// </param>
                /// <param name="symbuf">The buffer to hold symbols to send to the MQ coder
                /// 
                /// </param>
                /// <param name="ctxtbuf">A buffer to hold the contexts to use in sending the
                /// buffered symbols to the MQ coder.
                /// 
                /// </param>
                /// <param name="ratebuf">The buffer where to store the rate (i.e. coded lenth) at 
                /// the end of this coding pass.
                /// 
                /// </param>
                /// <param name="pidx">The coding pass index. Is the index in the 'ratebuf' array
                /// where to store the coded length after this coding pass.
                /// 
                /// </param>
                /// <param name="ltpidx">The index of the last pass that was terminated, or
                /// negative if none.
                /// 
                /// </param>
                /// <param name="options">The bitmask of entropy coding options to apply to the
                /// code-block
                /// 
                /// </param>
                /// <returns> The decrease in distortion for this pass, in the fixed-point
                /// normalized representation of the 'FS_LOSSY' and 'FS_LOSSLESS' tables.
                /// 
                /// </returns>
                static private int magRefPass(CBlkWTData srcblk, MQCoder mq, bool doterm, int bp, int[] state, int[] fm, int[] symbuf, int[] ctxtbuf, int[] ratebuf, int pidx, int ltpidx, int options)
                {
                        int j, sj; // The state index for line and stripe
                        int k, sk; // The data index for line and stripe
                        int nsym = 0; // Symbol counter for symbol and context buffers
                        int dscanw; // The data scan-width
                        int sscanw; // The state scan-width
                        int jstep; // Stripe to stripe step for 'sj'
                        int kstep; // Stripe to stripe step for 'sk'
                        int stopsk; // The loop limit on the variable sk
                        int csj; // Local copy (i.e. cached) of 'state[j]'
                        int mask; // The mask for the current bit-plane
                        int[] data; // The data buffer
                        int dist; // The distortion reduction for this pass
                        int shift; // Shift amount for distortion
                        int upshift; // Shift left amount for distortion
                        int downshift; // Shift right amount for distortion
                        int normval; // The normalized sample magnitude value
                        int s; // The stripe index
                        int nstripes; // The number of stripes in the code-block
                        int sheight; // Height of the current stripe
                        
                        // Initialize local variables
                        dscanw = srcblk.scanw;
                        sscanw = srcblk.w + 2;
                        jstep = sscanw * CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT / 2 - srcblk.w;
                        kstep = dscanw * CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT - srcblk.w;
                        mask = 1 << bp;
                        data = (int[]) srcblk.Data;
                        nstripes = (srcblk.h + CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT - 1) / CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT;
                        dist = 0;
                        // We use the bit just coded plus MSE_LKP_BITS-1 bits below the bit
                        // just coded for distortion estimation.
                        shift = bp - MSE_LKP_BITS_M1;
                        upshift = (shift >= 0)?0:- shift;
                        downshift = (shift <= 0)?0:shift;
                        
                        // Code stripe by stripe
                        sk = srcblk.offset;
                        sj = sscanw + 1;
                        for (s = nstripes - 1; s >= 0; s--, sk += kstep, sj += jstep)
                        {
                                sheight = (s != 0)?CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT:srcblk.h - (nstripes - 1) * CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT;
                                stopsk = sk + srcblk.w;
                                // Scan by set of 1 stripe column at a time
                                for (nsym = 0; sk < stopsk; sk++, sj++)
                                {
                                        // Do half top of column
                                        j = sj;
                                        csj = state[j];
                                        // If any of the two samples is significant and not yet
                                        // visited in the current bit-plane we can not skip them
                                        if ((((SupportClass.URShift(csj, 1)) & (~ csj)) & VSTD_MASK_R1R2) != 0)
                                        {
                                                k = sk;
                                                // Scan first row
                                                if ((csj & (STATE_SIG_R1 | STATE_VISITED_R1)) == STATE_SIG_R1)
                                                {
                                                        // Apply MR primitive
                                                        symbuf[nsym] = SupportClass.URShift((data[k] & mask), bp);
                                                        ctxtbuf[nsym++] = MR_LUT[csj & MR_MASK];
                                                        // Update the STATE_PREV_MR bit
                                                        csj |= STATE_PREV_MR_R1;
                                                        // Update distortion
                                                        normval = (data[k] >> downshift) << upshift;
                                                        dist += fm[normval & ((1 << MSE_LKP_BITS) - 1)];
                                                }
                                                if (sheight < 2)
                                                {
                                                        state[j] = csj;
                                                        continue;
                                                }
                                                // Scan second row
                                                if ((csj & (STATE_SIG_R2 | STATE_VISITED_R2)) == STATE_SIG_R2)
                                                {
                                                        k += dscanw;
                                                        // Apply MR primitive
                                                        symbuf[nsym] = SupportClass.URShift((data[k] & mask), bp);
                                                        ctxtbuf[nsym++] = MR_LUT[(SupportClass.URShift(csj, STATE_SEP)) & MR_MASK];
                                                        // Update the STATE_PREV_MR bit
                                                        csj |= STATE_PREV_MR_R2;
                                                        // Update distortion
                                                        normval = (data[k] >> downshift) << upshift;
                                                        dist += fm[normval & ((1 << MSE_LKP_BITS) - 1)];
                                                }
                                                state[j] = csj;
                                        }
                                        // Do half bottom of column
                                        if (sheight < 3)
                                                continue;
                                        j += sscanw;
                                        csj = state[j];
                                        // If any of the two samples is significant and not yet
                                        // visited in the current bit-plane we can not skip them
                                        if ((((SupportClass.URShift(csj, 1)) & (~ csj)) & VSTD_MASK_R1R2) != 0)
                                        {
                                                k = sk + (dscanw << 1);
                                                // Scan first row
                                                if ((csj & (STATE_SIG_R1 | STATE_VISITED_R1)) == STATE_SIG_R1)
                                                {
                                                        // Apply MR primitive
                                                        symbuf[nsym] = SupportClass.URShift((data[k] & mask), bp);
                                                        ctxtbuf[nsym++] = MR_LUT[csj & MR_MASK];
                                                        // Update the STATE_PREV_MR bit
                                                        csj |= STATE_PREV_MR_R1;
                                                        // Update distortion
                                                        normval = (data[k] >> downshift) << upshift;
                                                        dist += fm[normval & ((1 << MSE_LKP_BITS) - 1)];
                                                }
                                                if (sheight < 4)
                                                {
                                                        state[j] = csj;
                                                        continue;
                                                }
                                                // Scan second row
                                                if ((state[j] & (STATE_SIG_R2 | STATE_VISITED_R2)) == STATE_SIG_R2)
                                                {
                                                        k += dscanw;
                                                        // Apply MR primitive
                                                        symbuf[nsym] = SupportClass.URShift((data[k] & mask), bp);
                                                        ctxtbuf[nsym++] = MR_LUT[(SupportClass.URShift(csj, STATE_SEP)) & MR_MASK];
                                                        // Update the STATE_PREV_MR bit
                                                        csj |= STATE_PREV_MR_R2;
                                                        // Update distortion
                                                        normval = (data[k] >> downshift) << upshift;
                                                        dist += fm[normval & ((1 << MSE_LKP_BITS) - 1)];
                                                }
                                                state[j] = csj;
                                        }
                                }
                                // Code all buffered symbols, if any
                                if (nsym > 0)
                                        mq.codeSymbols(symbuf, ctxtbuf, nsym);
                        }
                        
                        // Reset the MQ context states if we need to
                        if ((options & CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_RESET_MQ) != 0)
                        {
                                mq.resetCtxts();
                        }
                        
                        // Terminate the MQ bit stream if we need to
                        if (doterm)
                        {
                                ratebuf[pidx] = mq.terminate(); // Termination has special length
                        }
                        else
                        {
                                // Use normal length calculation
                                ratebuf[pidx] = mq.NumCodedBytes;
                        }
                        // Add length of previous segments, if any
                        if (ltpidx >= 0)
                        {
                                ratebuf[pidx] += ratebuf[ltpidx];
                        }
                        // Finish length calculation if needed
                        if (doterm)
                        {
                                mq.finishLengthCalculation(ratebuf, pidx);
                        }
                        
                        // Return the reduction in distortion
                        return dist;
                }
                
                /// <summary> Performs the magnitude refinement pass on the specified data and
                /// bit-plane, without using the arithmetic coder. It codes the samples
                /// which are significant and which do not have the "visited" state bit
                /// turned on, using the MR primitive. The "visited" state bit is not
                /// mofified for any samples.
                /// 
                /// <p>In this method, the arithmetic coder is bypassed, and raw bits are
                /// directly written in the bit stream (useful when distribution are close
                /// to uniform, for intance, at high bit-rates and at lossless
                /// compression). The 'STATE_PREV_MR_R1' and 'STATE_PREV_MR_R2' bits are
                /// not set because they are used only when the arithmetic coder is not
                /// bypassed.</p>
                /// 
                /// </summary>
                /// <param name="srcblk">The code-block data to code
                /// 
                /// </param>
                /// <param name="bout">The bit based output
                /// 
                /// </param>
                /// <param name="doterm">If true the bit based output is byte aligned after the
                /// end of the pass.
                /// 
                /// </param>
                /// <param name="bp">The bit-plane to code
                /// 
                /// </param>
                /// <param name="state">The state information for the code-block
                /// 
                /// </param>
                /// <param name="fm">The distortion estimation lookup table for MR
                /// 
                /// </param>
                /// <param name="ratebuf">The buffer where to store the rate (i.e. coded lenth) at 
                /// the end of this coding pass.
                /// 
                /// </param>
                /// <param name="pidx">The coding pass index. Is the index in the 'ratebuf' array
                /// where to store the coded length after this coding pass.
                /// 
                /// </param>
                /// <param name="ltpidx">The index of the last pass that was terminated, or
                /// negative if none.
                /// 
                /// </param>
                /// <param name="options">The bitmask of entropy coding options to apply to the
                /// code-block
                /// 
                /// </param>
                /// <returns> The decrease in distortion for this pass, in the fixed-point
                /// normalized representation of the 'FS_LOSSY' and 'FS_LOSSLESS' tables.
                /// 
                /// </returns>
                static private int rawMagRefPass(CBlkWTData srcblk, BitToByteOutput bout, bool doterm, int bp, int[] state, int[] fm, int[] ratebuf, int pidx, int ltpidx, int options)
                {
                        int j, sj; // The state index for line and stripe
                        int k, sk; // The data index for line and stripe
                        int dscanw; // The data scan-width
                        int sscanw; // The state scan-width
                        int jstep; // Stripe to stripe step for 'sj'
                        int kstep; // Stripe to stripe step for 'sk'
                        int stopsk; // The loop limit on the variable sk
                        int csj; // Local copy (i.e. cached) of 'state[j]'
                        int mask; // The mask for the current bit-plane
                        int[] data; // The data buffer
                        int dist; // The distortion reduction for this pass
                        int shift; // Shift amount for distortion
                        int upshift; // Shift left amount for distortion
                        int downshift; // Shift right amount for distortion
                        int normval; // The normalized sample magnitude value
                        int s; // The stripe index
                        int nstripes; // The number of stripes in the code-block
                        int sheight; // Height of the current stripe
                        int nsym = 0;
                        
                        // Initialize local variables
                        dscanw = srcblk.scanw;
                        sscanw = srcblk.w + 2;
                        jstep = sscanw * CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT / 2 - srcblk.w;
                        kstep = dscanw * CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT - srcblk.w;
                        mask = 1 << bp;
                        data = (int[]) srcblk.Data;
                        nstripes = (srcblk.h + CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT - 1) / CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT;
                        dist = 0;
                        // We use the bit just coded plus MSE_LKP_BITS-1 bits below the bit
                        // just coded for distortion estimation.
                        shift = bp - MSE_LKP_BITS_M1;
                        upshift = (shift >= 0)?0:- shift;
                        downshift = (shift <= 0)?0:shift;
                        
                        // Code stripe by stripe
                        sk = srcblk.offset;
                        sj = sscanw + 1;
                        for (s = nstripes - 1; s >= 0; s--, sk += kstep, sj += jstep)
                        {
                                sheight = (s != 0)?CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT:srcblk.h - (nstripes - 1) * CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT;
                                stopsk = sk + srcblk.w;
                                // Scan by set of 1 stripe column at a time
                                for (; sk < stopsk; sk++, sj++)
                                {
                                        // Do half top of column
                                        j = sj;
                                        csj = state[j];
                                        // If any of the two samples is significant and not yet
                                        // visited in the current bit-plane we can not skip them
                                        if ((((SupportClass.URShift(csj, 1)) & (~ csj)) & VSTD_MASK_R1R2) != 0)
                                        {
                                                k = sk;
                                                // Scan first row
                                                if ((csj & (STATE_SIG_R1 | STATE_VISITED_R1)) == STATE_SIG_R1)
                                                {
                                                        // Code bit "raw"
                                                        bout.writeBit(SupportClass.URShift((data[k] & mask), bp));
                                                        nsym++;
                                                        // No need to set STATE_PREV_MR_R1 since all magnitude 
                                                        // refinement passes to follow are "raw"
                                                        // Update distortion
                                                        normval = (data[k] >> downshift) << upshift;
                                                        dist += fm[normval & ((1 << MSE_LKP_BITS) - 1)];
                                                }
                                                if (sheight < 2)
                                                        continue;
                                                // Scan second row
                                                if ((csj & (STATE_SIG_R2 | STATE_VISITED_R2)) == STATE_SIG_R2)
                                                {
                                                        k += dscanw;
                                                        // Code bit "raw"
                                                        bout.writeBit(SupportClass.URShift((data[k] & mask), bp));
                                                        nsym++;
                                                        // No need to set STATE_PREV_MR_R2 since all magnitude 
                                                        // refinement passes to follow are "raw"
                                                        // Update distortion
                                                        normval = (data[k] >> downshift) << upshift;
                                                        dist += fm[normval & ((1 << MSE_LKP_BITS) - 1)];
                                                }
                                        }
                                        // Do half bottom of column
                                        if (sheight < 3)
                                                continue;
                                        j += sscanw;
                                        csj = state[j];
                                        // If any of the two samples is significant and not yet
                                        // visited in the current bit-plane we can not skip them
                                        if ((((SupportClass.URShift(csj, 1)) & (~ csj)) & VSTD_MASK_R1R2) != 0)
                                        {
                                                k = sk + (dscanw << 1);
                                                // Scan first row
                                                if ((csj & (STATE_SIG_R1 | STATE_VISITED_R1)) == STATE_SIG_R1)
                                                {
                                                        // Code bit "raw"
                                                        bout.writeBit(SupportClass.URShift((data[k] & mask), bp));
                                                        nsym++;
                                                        // No need to set STATE_PREV_MR_R1 since all magnitude 
                                                        // refinement passes to follow are "raw"
                                                        // Update distortion
                                                        normval = (data[k] >> downshift) << upshift;
                                                        dist += fm[normval & ((1 << MSE_LKP_BITS) - 1)];
                                                }
                                                if (sheight < 4)
                                                        continue;
                                                // Scan second row
                                                if ((state[j] & (STATE_SIG_R2 | STATE_VISITED_R2)) == STATE_SIG_R2)
                                                {
                                                        k += dscanw;
                                                        // Code bit "raw"
                                                        bout.writeBit(SupportClass.URShift((data[k] & mask), bp));
                                                        nsym++;
                                                        // No need to set STATE_PREV_MR_R2 since all magnitude 
                                                        // refinement passes to follow are "raw"
                                                        // Update distortion
                                                        normval = (data[k] >> downshift) << upshift;
                                                        dist += fm[normval & ((1 << MSE_LKP_BITS) - 1)];
                                                }
                                        }
                                }
                        }
                        
                        // Get length and terminate if needed
                        if (doterm)
                        {
                                ratebuf[pidx] = bout.terminate();
                        }
                        else
                        {
                                ratebuf[pidx] = bout.length();
                        }
                        
                        // Add length of previous segments, if any
                        if (ltpidx >= 0)
                        {
                                ratebuf[pidx] += ratebuf[ltpidx];
                        }
                        
                        // Return the reduction in distortion
                        return dist;
                }
                
                /// <summary> Performs the cleanup pass on the specified data and bit-plane. It codes
                /// all insignificant samples which have its "visited" state bit off, using
                /// the ZC, SC, and RLC primitives. It toggles the "visited" state bit to 0
                /// (off) for all samples in the code-block.
                /// 
                /// </summary>
                /// <param name="srcblk">The code-block data to code
                /// 
                /// </param>
                /// <param name="mq">The MQ-coder to use
                /// 
                /// </param>
                /// <param name="doterm">If true it performs an MQ-coder termination after the end
                /// of the pass
                /// 
                /// </param>
                /// <param name="bp">The bit-plane to code
                /// 
                /// </param>
                /// <param name="state">The state information for the code-block
                /// 
                /// </param>
                /// <param name="fs">The distortion estimation lookup table for SC
                /// 
                /// </param>
                /// <param name="zc_lut">The ZC lookup table to use in ZC.
                /// 
                /// </param>
                /// <param name="symbuf">The buffer to hold symbols to send to the MQ coder
                /// 
                /// </param>
                /// <param name="ctxtbuf">A buffer to hold the contexts to use in sending the
                /// buffered symbols to the MQ coder.
                /// 
                /// </param>
                /// <param name="ratebuf">The buffer where to store the rate (i.e. coded lenth) at 
                /// the end of this coding pass.
                /// 
                /// </param>
                /// <param name="pidx">The coding pass index. Is the index in the 'ratebuf' array
                /// where to store the coded length after this coding pass.
                /// 
                /// </param>
                /// <param name="ltpidx">The index of the last pass that was terminated, or
                /// negative if none.
                /// 
                /// </param>
                /// <param name="options">The bitmask of entropy coding options to apply to the
                /// code-block
                /// 
                /// </param>
                /// <returns> The decrease in distortion for this pass, in the fixed-point
                /// normalized representation of the 'FS_LOSSY' and 'FS_LOSSLESS' tables.
                /// 
                /// </returns>
                static private int cleanuppass(CBlkWTData srcblk, MQCoder mq, bool doterm, int bp, int[] state, int[] fs, int[] zc_lut, int[] symbuf, int[] ctxtbuf, int[] ratebuf, int pidx, int ltpidx, int options)
                {
                        // NOTE: The speedup mode of the MQ coder has been briefly tried to
                        // speed up the coding of insignificants RLCs, without any success
                        // (i.e. no speedup whatsoever). The use of the speedup mode should be
                        // revisisted more in depth and the implementationn of it in MQCoder
                        // should be reviewed for optimization opportunities.
                        int j, sj; // The state index for line and stripe
                        int k, sk; // The data index for line and stripe
                        int nsym = 0; // Symbol counter for symbol and context buffers
                        int dscanw; // The data scan-width
                        int sscanw; // The state scan-width
                        int jstep; // Stripe to stripe step for 'sj'
                        int kstep; // Stripe to stripe step for 'sk'
                        int stopsk; // The loop limit on the variable sk
                        int csj; // Local copy (i.e. cached) of 'state[j]'
                        int mask; // The mask for the current bit-plane
                        int sym; // The symbol to code
                        int rlclen; // Length of RLC
                        int ctxt; // The context to use
                        int[] data; // The data buffer
                        int dist; // The distortion reduction for this pass
                        int shift; // Shift amount for distortion
                        int upshift; // Shift left amount for distortion
                        int downshift; // Shift right amount for distortion
                        int normval; // The normalized sample magnitude value
                        int s; // The stripe index
                        bool causal; // Flag to indicate if stripe-causal context
                        // formation is to be used
                        int nstripes; // The number of stripes in the code-block
                        int sheight; // Height of the current stripe
                        int off_ul, off_ur, off_dr, off_dl; // offsets
                        
                        // Initialize local variables
                        dscanw = srcblk.scanw;
                        sscanw = srcblk.w + 2;
                        jstep = sscanw * CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT / 2 - srcblk.w;
                        kstep = dscanw * CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT - srcblk.w;
                        mask = 1 << bp;
                        data = (int[]) srcblk.Data;
                        nstripes = (srcblk.h + CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT - 1) / CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT;
                        dist = 0;
                        // We use the MSE_LKP_BITS-1 bits below the bit just coded for
                        // distortion estimation.
                        shift = bp - MSE_LKP_BITS_M1;
                        upshift = (shift >= 0)?0:- shift;
                        downshift = (shift <= 0)?0:shift;
                        causal = (options & CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_VERT_STR_CAUSAL) != 0;
                        
                        // Pre-calculate offsets in 'state' for diagonal neighbors
                        off_ul = - sscanw - 1; // up-left
                        off_ur = - sscanw + 1; // up-right
                        off_dr = sscanw + 1; // down-right
                        off_dl = sscanw - 1; // down-left
                        
                        // Code stripe by stripe
                        sk = srcblk.offset;
                        sj = sscanw + 1;
                        for (s = nstripes - 1; s >= 0; s--, sk += kstep, sj += jstep)
                        {
                                sheight = (s != 0)?CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT:srcblk.h - (nstripes - 1) * CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT;
                                stopsk = sk + srcblk.w;
                                // Scan by set of 1 stripe column at a time
                                for (nsym = 0; sk < stopsk; sk++, sj++)
                                {
                                        // Start column
                                        j = sj;
                                        csj = state[j];
                                        {
                                                // Check for RLC: if all samples are not significant, not
                                                // visited and do not have a non-zero context, and column
                                                // is full height, we do RLC.
                                                if (csj == 0 && state[j + sscanw] == 0 && sheight == CSJ2K.j2k.entropy.StdEntropyCoderOptions.STRIPE_HEIGHT)
                                                {
                                                        k = sk;
                                                        if ((data[k] & mask) != 0)
                                                        {
                                                                rlclen = 0;
                                                        }
                                                        else if ((data[k += dscanw] & mask) != 0)
                                                        {
                                                                rlclen = 1;
                                                        }
                                                        else if ((data[k += dscanw] & mask) != 0)
                                                        {
                                                                rlclen = 2;
                                                                j += sscanw;
                                                                csj = state[j];
                                                        }
                                                        else if ((data[k += dscanw] & mask) != 0)
                                                        {
                                                                rlclen = 3;
                                                                j += sscanw;
                                                                csj = state[j];
                                                        }
                                                        else
                                                        {
                                                                // Code insignificant RLC
                                                                symbuf[nsym] = 0;
                                                                ctxtbuf[nsym++] = RLC_CTXT;
                                                                // Goto next column
                                                                continue;
                                                        }
                                                        // Code significant RLC
                                                        symbuf[nsym] = 1;
                                                        ctxtbuf[nsym++] = RLC_CTXT;
                                                        // Send MSB bit index
                                                        symbuf[nsym] = rlclen >> 1;
                                                        ctxtbuf[nsym++] = UNIF_CTXT;
                                                        // Send LSB bit index
                                                        symbuf[nsym] = rlclen & 0x01;
                                                        ctxtbuf[nsym++] = UNIF_CTXT;
                                                        // Code sign of sample that became significant
                                                        // Update distortion
                                                        normval = (data[k] >> downshift) << upshift;
                            dist += fs[normval & ((1 << MSE_LKP_BITS_M1) - 1)];
                                                        // Apply sign coding
                                                        sym = SupportClass.URShift(data[k], 31);
                                                        if ((rlclen & 0x01) == 0)
                                                        {
                                                                // Sample that became significant is first row of
                                                                // its column half
                                                                ctxt = SC_LUT[(SupportClass.URShift(csj, SC_SHIFT_R1)) & SC_MASK];
                                                                symbuf[nsym] = sym ^ (SupportClass.URShift(ctxt, SC_SPRED_SHIFT));
                                                                ctxtbuf[nsym++] = ctxt & SC_LUT_MASK;
                                                                // Update state information (significant bit,
                                                                // visited bit, neighbor significant bit of
                                                                // neighbors, non zero context of neighbors, sign
                                                                // of neighbors)
                                                                if (rlclen != 0 || !causal)
                                                                {
                                                                        // If in causal mode do not change contexts of 
                                                                        // previous stripe.
                                                                        state[j + off_ul] |= STATE_NZ_CTXT_R2 | STATE_D_DR_R2;
                                                                        state[j + off_ur] |= STATE_NZ_CTXT_R2 | STATE_D_DL_R2;
                                                                }
                                                                // Update sign state information of neighbors
                                                                if (sym != 0)
                                                                {
                                                                        csj |= STATE_SIG_R1 | STATE_VISITED_R1 | STATE_NZ_CTXT_R2 | STATE_V_U_R2 | STATE_V_U_SIGN_R2;
                                                                        if (rlclen != 0 || !causal)
                                                                        {
                                                                                // If in causal mode do not change
                                                                                // contexts of previous stripe.
                                                                                state[j - sscanw] |= STATE_NZ_CTXT_R2 | STATE_V_D_R2 | STATE_V_D_SIGN_R2;
                                                                        }
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_L_R1 | STATE_H_L_SIGN_R1 | STATE_D_UL_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_R_R1 | STATE_H_R_SIGN_R1 | STATE_D_UR_R2;
                                                                }
                                                                else
                                                                {
                                                                        csj |= STATE_SIG_R1 | STATE_VISITED_R1 | STATE_NZ_CTXT_R2 | STATE_V_U_R2;
                                                                        if (rlclen != 0 || !causal)
                                                                        {
                                                                                // If in causal mode do not change
                                                                                // contexts of previous stripe.
                                                                                state[j - sscanw] |= STATE_NZ_CTXT_R2 | STATE_V_D_R2;
                                                                        }
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_L_R1 | STATE_D_UL_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_R_R1 | STATE_D_UR_R2;
                                                                }
                                                                // Changes to csj are saved later
                                                                if ((rlclen >> 1) != 0)
                                                                {
                                                                        // Sample that became significant is in bottom
                                                                        // half of column => jump to bottom half
                                                                        //UPGRADE_NOTE: Labeled break statement was changed to a goto statement. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1012'"
                                                                        goto top_half_brk;
                                                                }
                                                                // Otherwise sample that became significant is in
                                                                // top half of column => continue on top half
                                                        }
                                                        else
                                                        {
                                                                // Sample that became significant is second row of
                                                                // its column half
                                                                ctxt = SC_LUT[(SupportClass.URShift(csj, SC_SHIFT_R2)) & SC_MASK];
                                                                symbuf[nsym] = sym ^ (SupportClass.URShift(ctxt, SC_SPRED_SHIFT));
                                                                ctxtbuf[nsym++] = ctxt & SC_LUT_MASK;
                                                                // Update state information (significant bit,
                                                                // neighbor significant bit of neighbors, non zero
                                                                // context of neighbors, sign of neighbors)
                                                                state[j + off_dl] |= STATE_NZ_CTXT_R1 | STATE_D_UR_R1;
                                                                state[j + off_dr] |= STATE_NZ_CTXT_R1 | STATE_D_UL_R1;
                                                                // Update sign state information of neighbors
                                                                if (sym != 0)
                                                                {
                                                                        csj |= STATE_SIG_R2 | STATE_NZ_CTXT_R1 | STATE_V_D_R1 | STATE_V_D_SIGN_R1;
                                                                        state[j + sscanw] |= STATE_NZ_CTXT_R1 | STATE_V_U_R1 | STATE_V_U_SIGN_R1;
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DL_R1 | STATE_H_L_R2 | STATE_H_L_SIGN_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DR_R1 | STATE_H_R_R2 | STATE_H_R_SIGN_R2;
                                                                }
                                                                else
                                                                {
                                                                        csj |= STATE_SIG_R2 | STATE_NZ_CTXT_R1 | STATE_V_D_R1;
                                                                        state[j + sscanw] |= STATE_NZ_CTXT_R1 | STATE_V_U_R1;
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DL_R1 | STATE_H_L_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DR_R1 | STATE_H_R_R2;
                                                                }
                                                                // Save changes to csj
                                                                state[j] = csj;
                                                                if ((rlclen >> 1) != 0)
                                                                {
                                                                        // Sample that became significant is in bottom
                                                                        // half of column => we're done with this
                                                                        // column
                                                                        continue;
                                                                }
                                                                // Otherwise sample that became significant is in
                                                                // top half of column => we're done with top
                                                                // column
                                                                j += sscanw;
                                                                csj = state[j];
                                                                //UPGRADE_NOTE: Labeled break statement was changed to a goto statement. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1012'"
                                                                goto top_half_brk;
                                                        }
                                                }
                                                // Do half top of column
                                                // If any of the two samples is not significant and has
                                                // not been visited in the current bit-plane we can not
                                                // skip them
                                                if ((((csj >> 1) | csj) & VSTD_MASK_R1R2) != VSTD_MASK_R1R2)
                                                {
                                                        k = sk;
                                                        // Scan first row
                                                        if ((csj & (STATE_SIG_R1 | STATE_VISITED_R1)) == 0)
                                                        {
                                                                // Apply zero coding
                                                                ctxtbuf[nsym] = zc_lut[csj & ZC_MASK];
                                                                if ((symbuf[nsym++] = SupportClass.URShift((data[k] & mask), bp)) != 0)
                                                                {
                                                                        // Became significant
                                                                        // Apply sign coding
                                                                        sym = SupportClass.URShift(data[k], 31);
                                                                        ctxt = SC_LUT[(SupportClass.URShift(csj, SC_SHIFT_R1)) & SC_MASK];
                                                                        symbuf[nsym] = sym ^ (SupportClass.URShift(ctxt, SC_SPRED_SHIFT));
                                                                        ctxtbuf[nsym++] = ctxt & SC_LUT_MASK;
                                                                        // Update state information (significant bit,
                                                                        // visited bit, neighbor significant bit of
                                                                        // neighbors, non zero context of neighbors,
                                                                        // sign of neighbors)
                                                                        if (!causal)
                                                                        {
                                                                                // If in causal mode do not change
                                                                                // contexts of previous stripe.
                                                                                state[j + off_ul] |= STATE_NZ_CTXT_R2 | STATE_D_DR_R2;
                                                                                state[j + off_ur] |= STATE_NZ_CTXT_R2 | STATE_D_DL_R2;
                                                                        }
                                                                        // Update sign state information of neighbors
                                                                        if (sym != 0)
                                                                        {
                                                                                csj |= STATE_SIG_R1 | STATE_VISITED_R1 | STATE_NZ_CTXT_R2 | STATE_V_U_R2 | STATE_V_U_SIGN_R2;
                                                                                if (!causal)
                                                                                {
                                                                                        // If in causal mode do not change
                                                                                        // contexts of previous stripe.
                                                                                        state[j - sscanw] |= STATE_NZ_CTXT_R2 | STATE_V_D_R2 | STATE_V_D_SIGN_R2;
                                                                                }
                                                                                state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_L_R1 | STATE_H_L_SIGN_R1 | STATE_D_UL_R2;
                                                                                state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_R_R1 | STATE_H_R_SIGN_R1 | STATE_D_UR_R2;
                                                                        }
                                                                        else
                                                                        {
                                                                                csj |= STATE_SIG_R1 | STATE_VISITED_R1 | STATE_NZ_CTXT_R2 | STATE_V_U_R2;
                                                                                if (!causal)
                                                                                {
                                                                                        // If in causal mode do not change
                                                                                        // contexts of previous stripe.
                                                                                        state[j - sscanw] |= STATE_NZ_CTXT_R2 | STATE_V_D_R2;
                                                                                }
                                                                                state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_L_R1 | STATE_D_UL_R2;
                                                                                state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_R_R1 | STATE_D_UR_R2;
                                                                        }
                                                                        // Update distortion
                                                                        normval = (data[k] >> downshift) << upshift;
                                                                        dist += fs[normval & ((1 << MSE_LKP_BITS_M1) - 1)];
                                                                }
                                                        }
                                                        if (sheight < 2)
                                                        {
                                                                csj &= ~ (STATE_VISITED_R1 | STATE_VISITED_R2);
                                                                state[j] = csj;
                                                                continue;
                                                        }
                                                        // Scan second row
                                                        if ((csj & (STATE_SIG_R2 | STATE_VISITED_R2)) == 0)
                                                        {
                                                                k += dscanw;
                                                                // Apply zero coding
                                                                ctxtbuf[nsym] = zc_lut[(SupportClass.URShift(csj, STATE_SEP)) & ZC_MASK];
                                                                if ((symbuf[nsym++] = SupportClass.URShift((data[k] & mask), bp)) != 0)
                                                                {
                                                                        // Became significant
                                                                        // Apply sign coding
                                                                        sym = SupportClass.URShift(data[k], 31);
                                                                        ctxt = SC_LUT[(SupportClass.URShift(csj, SC_SHIFT_R2)) & SC_MASK];
                                                                        symbuf[nsym] = sym ^ (SupportClass.URShift(ctxt, SC_SPRED_SHIFT));
                                                                        ctxtbuf[nsym++] = ctxt & SC_LUT_MASK;
                                                                        // Update state information (significant bit,
                                                                        // visited bit, neighbor significant bit of
                                                                        // neighbors, non zero context of neighbors,
                                                                        // sign of neighbors)
                                                                        state[j + off_dl] |= STATE_NZ_CTXT_R1 | STATE_D_UR_R1;
                                                                        state[j + off_dr] |= STATE_NZ_CTXT_R1 | STATE_D_UL_R1;
                                                                        // Update sign state information of neighbors
                                                                        if (sym != 0)
                                                                        {
                                                                                csj |= STATE_SIG_R2 | STATE_VISITED_R2 | STATE_NZ_CTXT_R1 | STATE_V_D_R1 | STATE_V_D_SIGN_R1;
                                                                                state[j + sscanw] |= STATE_NZ_CTXT_R1 | STATE_V_U_R1 | STATE_V_U_SIGN_R1;
                                                                                state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DL_R1 | STATE_H_L_R2 | STATE_H_L_SIGN_R2;
                                                                                state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DR_R1 | STATE_H_R_R2 | STATE_H_R_SIGN_R2;
                                                                        }
                                                                        else
                                                                        {
                                                                                csj |= STATE_SIG_R2 | STATE_VISITED_R2 | STATE_NZ_CTXT_R1 | STATE_V_D_R1;
                                                                                state[j + sscanw] |= STATE_NZ_CTXT_R1 | STATE_V_U_R1;
                                                                                state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DL_R1 | STATE_H_L_R2;
                                                                                state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DR_R1 | STATE_H_R_R2;
                                                                        }
                                                                        // Update distortion
                                                                        normval = (data[k] >> downshift) << upshift;
                                                                        dist += fs[normval & ((1 << MSE_LKP_BITS_M1) - 1)];
                                                                }
                                                        }
                                                }
                                                csj &= ~ (STATE_VISITED_R1 | STATE_VISITED_R2);
                                                state[j] = csj;
                                                // Do half bottom of column
                                                if (sheight < 3)
                                                        continue;
                                                j += sscanw;
                                                csj = state[j];
                                        }
                                        //UPGRADE_NOTE: Label 'top_half_brk' was added. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1011'"

top_half_brk: ;
                                         // end of 'top_half' block
                                        // If any of the two samples is not significant and has
                                        // not been visited in the current bit-plane we can not
                                        // skip them
                                        if ((((csj >> 1) | csj) & VSTD_MASK_R1R2) != VSTD_MASK_R1R2)
                                        {
                                                k = sk + (dscanw << 1);
                                                // Scan first row
                                                if ((csj & (STATE_SIG_R1 | STATE_VISITED_R1)) == 0)
                                                {
                                                        // Apply zero coding
                                                        ctxtbuf[nsym] = zc_lut[csj & ZC_MASK];
                                                        if ((symbuf[nsym++] = SupportClass.URShift((data[k] & mask), bp)) != 0)
                                                        {
                                                                // Became significant
                                                                // Apply sign coding
                                                                sym = SupportClass.URShift(data[k], 31);
                                                                ctxt = SC_LUT[(SupportClass.URShift(csj, SC_SHIFT_R1)) & SC_MASK];
                                                                symbuf[nsym] = sym ^ (SupportClass.URShift(ctxt, SC_SPRED_SHIFT));
                                                                ctxtbuf[nsym++] = ctxt & SC_LUT_MASK;
                                                                // Update state information (significant bit,
                                                                // visited bit, neighbor significant bit of
                                                                // neighbors, non zero context of neighbors,
                                                                // sign of neighbors)
                                                                state[j + off_ul] |= STATE_NZ_CTXT_R2 | STATE_D_DR_R2;
                                                                state[j + off_ur] |= STATE_NZ_CTXT_R2 | STATE_D_DL_R2;
                                                                // Update sign state information of neighbors
                                                                if (sym != 0)
                                                                {
                                                                        csj |= STATE_SIG_R1 | STATE_VISITED_R1 | STATE_NZ_CTXT_R2 | STATE_V_U_R2 | STATE_V_U_SIGN_R2;
                                                                        state[j - sscanw] |= STATE_NZ_CTXT_R2 | STATE_V_D_R2 | STATE_V_D_SIGN_R2;
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_L_R1 | STATE_H_L_SIGN_R1 | STATE_D_UL_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_R_R1 | STATE_H_R_SIGN_R1 | STATE_D_UR_R2;
                                                                }
                                                                else
                                                                {
                                                                        csj |= STATE_SIG_R1 | STATE_VISITED_R1 | STATE_NZ_CTXT_R2 | STATE_V_U_R2;
                                                                        state[j - sscanw] |= STATE_NZ_CTXT_R2 | STATE_V_D_R2;
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_L_R1 | STATE_D_UL_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_H_R_R1 | STATE_D_UR_R2;
                                                                }
                                                                // Update distortion
                                                                normval = (data[k] >> downshift) << upshift;
                                                                dist += fs[normval & ((1 << MSE_LKP_BITS_M1) - 1)];
                                                        }
                                                }
                                                if (sheight < 4)
                                                {
                                                        csj &= ~ (STATE_VISITED_R1 | STATE_VISITED_R2);
                                                        state[j] = csj;
                                                        continue;
                                                }
                                                // Scan second row
                                                if ((csj & (STATE_SIG_R2 | STATE_VISITED_R2)) == 0)
                                                {
                                                        k += dscanw;
                                                        // Apply zero coding
                                                        ctxtbuf[nsym] = zc_lut[(SupportClass.URShift(csj, STATE_SEP)) & ZC_MASK];
                                                        if ((symbuf[nsym++] = SupportClass.URShift((data[k] & mask), bp)) != 0)
                                                        {
                                                                // Became significant
                                                                // Apply sign coding
                                                                sym = SupportClass.URShift(data[k], 31);
                                                                ctxt = SC_LUT[(SupportClass.URShift(csj, SC_SHIFT_R2)) & SC_MASK];
                                                                symbuf[nsym] = sym ^ (SupportClass.URShift(ctxt, SC_SPRED_SHIFT));
                                                                ctxtbuf[nsym++] = ctxt & SC_LUT_MASK;
                                                                // Update state information (significant bit,
                                                                // visited bit, neighbor significant bit of
                                                                // neighbors, non zero context of neighbors,
                                                                // sign of neighbors)
                                                                state[j + off_dl] |= STATE_NZ_CTXT_R1 | STATE_D_UR_R1;
                                                                state[j + off_dr] |= STATE_NZ_CTXT_R1 | STATE_D_UL_R1;
                                                                // Update sign state information of neighbors
                                                                if (sym != 0)
                                                                {
                                                                        csj |= STATE_SIG_R2 | STATE_VISITED_R2 | STATE_NZ_CTXT_R1 | STATE_V_D_R1 | STATE_V_D_SIGN_R1;
                                                                        state[j + sscanw] |= STATE_NZ_CTXT_R1 | STATE_V_U_R1 | STATE_V_U_SIGN_R1;
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DL_R1 | STATE_H_L_R2 | STATE_H_L_SIGN_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DR_R1 | STATE_H_R_R2 | STATE_H_R_SIGN_R2;
                                                                }
                                                                else
                                                                {
                                                                        csj |= STATE_SIG_R2 | STATE_VISITED_R2 | STATE_NZ_CTXT_R1 | STATE_V_D_R1;
                                                                        state[j + sscanw] |= STATE_NZ_CTXT_R1 | STATE_V_U_R1;
                                                                        state[j + 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DL_R1 | STATE_H_L_R2;
                                                                        state[j - 1] |= STATE_NZ_CTXT_R1 | STATE_NZ_CTXT_R2 | STATE_D_DR_R1 | STATE_H_R_R2;
                                                                }
                                                                // Update distortion
                                                                normval = (data[k] >> downshift) << upshift;
                                                                dist += fs[normval & ((1 << MSE_LKP_BITS_M1) - 1)];
                                                        }
                                                }
                                        }
                                        csj &= ~ (STATE_VISITED_R1 | STATE_VISITED_R2);
                                        state[j] = csj;
                                }
                                // Code all buffered symbols, if any
                                if (nsym > 0)
                                        mq.codeSymbols(symbuf, ctxtbuf, nsym);
                        }
                        
                        // Insert a segment marker if we need to
                        if ((options & CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_SEG_SYMBOLS) != 0)
                        {
                                mq.codeSymbols(SEG_SYMBOLS, SEG_SYMB_CTXTS, SEG_SYMBOLS.Length);
                        }
                        
                        // Reset the MQ context states if we need to
                        if ((options & CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_RESET_MQ) != 0)
                        {
                                mq.resetCtxts();
                        }
                        
                        // Terminate the MQ bit stream if we need to
                        if (doterm)
                        {
                                ratebuf[pidx] = mq.terminate(); // Termination has special length
                        }
                        else
                        {
                                // Use normal length calculation
                                ratebuf[pidx] = mq.NumCodedBytes;
                        }
                        // Add length of previous segments, if any
                        if (ltpidx >= 0)
                        {
                                ratebuf[pidx] += ratebuf[ltpidx];
                        }
                        // Finish length calculation if needed
                        if (doterm)
                        {
                                mq.finishLengthCalculation(ratebuf, pidx);
                        }
                        // Return the reduction in distortion
                        return dist;
                }
                
                /// <summary> Ensures that at the end of a non-terminated coding pass there is not a
                /// 0xFF byte, modifying the stored rates if necessary.
                /// 
                /// <p>Due to error resiliance reasons, a coding pass should never have its
                /// last byte be a 0xFF, since that can lead to the emulation of a resync
                /// marker. This method checks if that is the case, and reduces the rate
                /// for a given pass if necessary. The ommitted 0xFF will be synthetized by
                /// the decoder if necessary, as required by JPEG 2000. This method should
                /// only be called once that the entire code-block is coded.</p>
                /// 
                /// <p>Passes that are terminated are not checked for the 0xFF byte, since
                /// it is assumed that the termination procedure does not output any
                /// trailing 0xFF. Checking the terminated segments would involve much more
                /// than just modifying the stored rates.</p>
                /// 
                /// <p>NOTE: It is assumed by this method that the coded data does not
                /// contain consecutive 0xFF bytes, as is the case with the MQ and
                /// 'arithemetic coding bypass' bit stuffing policy. However, the
                /// termination policies used should also respect this requirement.</p>
                /// 
                /// </summary>
                /// <param name="data">The coded data for the code-block
                /// 
                /// </param>
                /// <param name="rates">The rate (i.e. accumulated number of bytes) for each
                /// coding pass
                /// 
                /// </param>
                /// <param name="isterm">An array of flags indicating, for each pass, if it is
                /// terminated or not. If null it is assumed that no pass is terminated,
                /// except the last one.
                /// 
                /// </param>
                /// <param name="n">The number of coding passes
                /// 
                /// </param>
                static private void  checkEndOfPassFF(byte[] data, int[] rates, bool[] isterm, int n)
                {
                        int dp; // the position to test in 'data'
                        
                        // If a pass ends in 0xFF we need to reduce the number of bytes in it,
                        // so that it does not end in 0xFF. We only need to go back one byte
                        // since there can be no consecutive 0xFF bytes.
                        
                        // If there are no terminated passes avoid the test on 'isterm'
                        if (isterm == null)
                        {
                                for (n--; n >= 0; n--)
                                {
                                        dp = rates[n] - 1;
                                        if (dp >= 0 && (data[dp] == (byte)0xFF))
                                        {
                                                rates[n]--;
                                        }
                                }
                        }
                        else
                        {
                                for (n--; n >= 0; n--)
                                {
                                        if (!isterm[n])
                                        {
                                                dp = rates[n] - 1;
                                                if (dp >= 0 && (data[dp] == (byte)0xFF))
                                                {
                                                        rates[n]--;
                                                }
                                        }
                                }
                        }
                }
                
                /// <summary> Load options, length calculation type and termination type for each
                /// tile-component.
                /// 
                /// </summary>
                /// <param name="nt">The number of tiles
                /// 
                /// </param>
                /// <param name="nc">The number of components
                /// 
                /// </param>
                public virtual void  initTileComp(int nt, int nc)
                {
                        
                        opts = new int[nt][];
                        for (int i2 = 0; i2 < nt; i2++)
                        {
                                opts[i2] = new int[nc];
                        }
                        lenCalc = new int[nt][];
                        for (int i3 = 0; i3 < nt; i3++)
                        {
                                lenCalc[i3] = new int[nc];
                        }
                        tType = new int[nt][];
                        for (int i4 = 0; i4 < nt; i4++)
                        {
                                tType[i4] = new int[nc];
                        }
                        
                        for (int t = 0; t < nt; t++)
                        {
                                for (int c = 0; c < nc; c++)
                                {
                                        opts[t][c] = 0;
                                        
                                        // Bypass coding mode ?
                                        if (((System.String) bms.getTileCompVal(t, c)).ToUpper().Equals("on".ToUpper()))
                                        {
                                                opts[t][c] |= CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_BYPASS;
                                        }
                                        // MQ reset after each coding pass ?
                                        if (((System.String) mqrs.getTileCompVal(t, c)).ToUpper().Equals("on".ToUpper()))
                                        {
                                                opts[t][c] |= CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_RESET_MQ;
                                        }
                                        // MQ termination after each arithmetically coded coding pass ?
                                        if (((System.String) rts.getTileCompVal(t, c)).ToUpper().Equals("on".ToUpper()))
                                        {
                                                opts[t][c] |= CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_TERM_PASS;
                                        }
                                        // Vertically stripe-causal context mode ?
                                        if (((System.String) css.getTileCompVal(t, c)).ToUpper().Equals("on".ToUpper()))
                                        {
                                                opts[t][c] |= CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_VERT_STR_CAUSAL;
                                        }
                                        // Error resilience segmentation symbol insertion ?
                                        if (((System.String) sss.getTileCompVal(t, c)).ToUpper().Equals("on".ToUpper()))
                                        {
                                                opts[t][c] |= CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_SEG_SYMBOLS;
                                        }
                                        
                                        // Set length calculation type of the MQ coder
                                        System.String lCalcType = (System.String) lcs.getTileCompVal(t, c);
                                        if (lCalcType.Equals("near_opt"))
                                        {
                                                lenCalc[t][c] = MQCoder.LENGTH_NEAR_OPT;
                                        }
                                        else if (lCalcType.Equals("lazy_good"))
                                        {
                                                lenCalc[t][c] = MQCoder.LENGTH_LAZY_GOOD;
                                        }
                                        else if (lCalcType.Equals("lazy"))
                                        {
                                                lenCalc[t][c] = MQCoder.LENGTH_LAZY;
                                        }
                                        else
                                        {
                                                throw new System.ArgumentException("Unrecognized or " + "unsupported MQ " + "length calculation.");
                                        }
                                        
                                        // Set termination type of MQ coder
                                        System.String termType = (System.String) tts.getTileCompVal(t, c);
                                        if (termType.ToUpper().Equals("easy".ToUpper()))
                                        {
                                                tType[t][c] = MQCoder.TERM_EASY;
                                        }
                                        else if (termType.ToUpper().Equals("full".ToUpper()))
                                        {
                                                tType[t][c] = MQCoder.TERM_FULL;
                                        }
                                        else if (termType.ToUpper().Equals("near_opt".ToUpper()))
                                        {
                                                tType[t][c] = MQCoder.TERM_NEAR_OPT;
                                        }
                                        else if (termType.ToUpper().Equals("predict".ToUpper()))
                                        {
                                                tType[t][c] = MQCoder.TERM_PRED_ER;
                                                opts[t][c] |= CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_PRED_TERM;
                                                if ((opts[t][c] & (CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_TERM_PASS | CSJ2K.j2k.entropy.StdEntropyCoderOptions.OPT_BYPASS)) == 0)
                                                {
                                                        FacilityManager.getMsgLogger().printmsg(CSJ2K.j2k.util.MsgLogger_Fields.INFO, "Using error resilient MQ" + " termination, but terminating only at " + "the end of code-blocks. The error " + "protection offered by this option will" + " be very weak. Specify the " + "'Cterminate' " + "and/or 'Cbypass' option for " + "increased error resilience.");
                                                }
                                        }
                                        else
                                        {
                                                throw new System.ArgumentException("Unrecognized or " + "unsupported " + "MQ coder " + "termination.");
                                        }
                                } // End loop on components
                        } // End loop on tiles
                }
                
                /// <summary> Returns the precinct partition width for the specified component, tile
                /// and resolution level.
                /// 
                /// </summary>
                /// <param name="t">the tile index
                /// 
                /// </param>
                /// <param name="c">the component
                /// 
                /// </param>
                /// <param name="rl">the resolution level
                /// 
                /// </param>
                /// <returns> The precinct partition width for the specified component, tile
                /// and resolution level
                /// 
                /// </returns>
                public override int getPPX(int t, int c, int rl)
                {
                        return pss.getPPX(t, c, rl);
                }
                
                /// <summary> Returns the precinct partition height for the specified component, tile
                /// and resolution level.
                /// 
                /// </summary>
                /// <param name="t">the tile index
                /// 
                /// </param>
                /// <param name="c">the component
                /// 
                /// </param>
                /// <param name="rl">the resolution level
                /// 
                /// </param>
                /// <returns> The precinct partition height for the specified component, tile
                /// and resolution level
                /// 
                /// </returns>
                public override int getPPY(int t, int c, int rl)
                {
                        return pss.getPPY(t, c, rl);
                }
                
                /// <summary> Returns true if precinct partition is used for the specified component
                /// and tile, returns false otherwise.
                /// 
                /// </summary>
                /// <param name="c">The component
                /// 
                /// </param>
                /// <param name="t">The tile 
                /// 
                /// </param>
                /// <returns> True if precinct partition is used for the specified component
                /// and tile, returns false otherwise.
                /// 
                /// </returns>
                public override bool precinctPartitionUsed(int c, int t)
                {
                        return precinctPartition[c][t];
                }
                /// <summary>Static initializer: initializes all the lookup tables. </summary>
                static StdEntropyCoder()
                {
                        {
                                int i, j;
                                double val, deltaMSE;
                                int[] inter_sc_lut;
                                int ds, us, rs, ls;
                                int dsgn, usgn, rsgn, lsgn;
                                int h, v;
                                
                                // Initialize the zero coding lookup tables
                                
                                // LH
                                
                                // - No neighbors significant
                                ZC_LUT_LH[0] = 2;
                                
                                // - No horizontal or vertical neighbors significant
                                for (i = 1; i < 16; i++)
                                {
                                        // Two or more diagonal coeffs significant
                                        ZC_LUT_LH[i] = 4;
                                }
                                for (i = 0; i < 4; i++)
                                {
                                        // Only one diagonal coeff significant
                                        ZC_LUT_LH[1 << i] = 3;
                                }
                                // - No horizontal neighbors significant, diagonal irrelevant
                                for (i = 0; i < 16; i++)
                                {
                                        // Only one vertical coeff significant
                                        ZC_LUT_LH[STATE_V_U_R1 | i] = 5;
                                        ZC_LUT_LH[STATE_V_D_R1 | i] = 5;
                                        // The two vertical coeffs significant
                                        ZC_LUT_LH[STATE_V_U_R1 | STATE_V_D_R1 | i] = 6;
                                }
                                // - One horiz. neighbor significant, diagonal/vertical non-significant
                                ZC_LUT_LH[STATE_H_L_R1] = 7;
                                ZC_LUT_LH[STATE_H_R_R1] = 7;
                                // - One horiz. significant, no vertical significant, one or more
                                // diagonal significant
                                for (i = 1; i < 16; i++)
                                {
                                        ZC_LUT_LH[STATE_H_L_R1 | i] = 8;
                                        ZC_LUT_LH[STATE_H_R_R1 | i] = 8;
                                }
                                // - One horiz. significant, one or more vertical significant,
                                // diagonal irrelevant
                                for (i = 1; i < 4; i++)
                                {
                                        for (j = 0; j < 16; j++)
                                        {
                                                ZC_LUT_LH[STATE_H_L_R1 | (i << 4) | j] = 9;
                                                ZC_LUT_LH[STATE_H_R_R1 | (i << 4) | j] = 9;
                                        }
                                }
                                // - Two horiz. significant, others irrelevant
                                for (i = 0; i < 64; i++)
                                {
                                        ZC_LUT_LH[STATE_H_L_R1 | STATE_H_R_R1 | i] = 10;
                                }
                                
                                // HL
                                
                                // - No neighbors significant
                                ZC_LUT_HL[0] = 2;
                                // - No horizontal or vertical neighbors significant
                                for (i = 1; i < 16; i++)
                                {
                                        // Two or more diagonal coeffs significant
                                        ZC_LUT_HL[i] = 4;
                                }
                                for (i = 0; i < 4; i++)
                                {
                                        // Only one diagonal coeff significant
                                        ZC_LUT_HL[1 << i] = 3;
                                }
                                // - No vertical significant, diagonal irrelevant
                                for (i = 0; i < 16; i++)
                                {
                                        // One horiz. significant
                                        ZC_LUT_HL[STATE_H_L_R1 | i] = 5;
                                        ZC_LUT_HL[STATE_H_R_R1 | i] = 5;
                                        // Two horiz. significant
                                        ZC_LUT_HL[STATE_H_L_R1 | STATE_H_R_R1 | i] = 6;
                                }
                                // - One vert. significant, diagonal/horizontal non-significant
                                ZC_LUT_HL[STATE_V_U_R1] = 7;
                                ZC_LUT_HL[STATE_V_D_R1] = 7;
                                // - One vert. significant, horizontal non-significant, one or more
                                // diag. significant
                                for (i = 1; i < 16; i++)
                                {
                                        ZC_LUT_HL[STATE_V_U_R1 | i] = 8;
                                        ZC_LUT_HL[STATE_V_D_R1 | i] = 8;
                                }
                                // - One vertical significant, one or more horizontal significant,
                                // diagonal irrelevant
                                for (i = 1; i < 4; i++)
                                {
                                        for (j = 0; j < 16; j++)
                                        {
                                                ZC_LUT_HL[(i << 6) | STATE_V_U_R1 | j] = 9;
                                                ZC_LUT_HL[(i << 6) | STATE_V_D_R1 | j] = 9;
                                        }
                                }
                                // - Two vertical significant, others irrelevant
                                for (i = 0; i < 4; i++)
                                {
                                        for (j = 0; j < 16; j++)
                                        {
                                                ZC_LUT_HL[(i << 6) | STATE_V_U_R1 | STATE_V_D_R1 | j] = 10;
                                        }
                                }
                                
                                // HH
                                int[] twoBits = new int[]{3, 5, 6, 9, 10, 12}; // Figures (between 0 and 15)
                                // countaning 2 and only 2 bits on in its binary representation.
                                
                                int[] oneBit = new int[]{1, 2, 4, 8}; // Figures (between 0 and 15)
                                // countaning 1 and only 1 bit on in its binary representation.
                                
                                int[] twoLeast = new int[]{3, 5, 6, 7, 9, 10, 11, 12, 13, 14, 15}; // Figures
                                // (between 0 and 15) countaining, at least, 2 bits on in its
                                // binary representation. 
                                
                                int[] threeLeast = new int[]{7, 11, 13, 14, 15}; // Figures
                                // (between 0 and 15) countaining, at least, 3 bits on in its
                                // binary representation.
                                
                                // - None significant
                                ZC_LUT_HH[0] = 2;
                                
                                // - One horizontal+vertical significant, none diagonal
                                for (i = 0; i < oneBit.Length; i++)
                                        ZC_LUT_HH[oneBit[i] << 4] = 3;
                                
                                // - Two or more horizontal+vertical significant, diagonal non-signif
                                for (i = 0; i < twoLeast.Length; i++)
                                        ZC_LUT_HH[twoLeast[i] << 4] = 4;
                                
                                // - One diagonal significant, horiz./vert. non-significant
                                for (i = 0; i < oneBit.Length; i++)
                                        ZC_LUT_HH[oneBit[i]] = 5;
                                
                                // - One diagonal significant, one horiz.+vert. significant
                                for (i = 0; i < oneBit.Length; i++)
                                        for (j = 0; j < oneBit.Length; j++)
                                                ZC_LUT_HH[(oneBit[i] << 4) | oneBit[j]] = 6;
                                
                                // - One diag signif, two or more horiz+vert signif
                                for (i = 0; i < twoLeast.Length; i++)
                                        for (j = 0; j < oneBit.Length; j++)
                                                ZC_LUT_HH[(twoLeast[i] << 4) | oneBit[j]] = 7;
                                
                                // - Two diagonal significant, none horiz+vert significant
                                for (i = 0; i < twoBits.Length; i++)
                                        ZC_LUT_HH[twoBits[i]] = 8;
                                
                                // - Two diagonal significant, one or more horiz+vert significant
                                for (j = 0; j < twoBits.Length; j++)
                                        for (i = 1; i < 16; i++)
                                                ZC_LUT_HH[(i << 4) | twoBits[j]] = 9;
                                
                                // - Three or more diagonal significant, horiz+vert irrelevant
                                for (i = 0; i < 16; i++)
                                        for (j = 0; j < threeLeast.Length; j++)
                                                ZC_LUT_HH[(i << 4) | threeLeast[j]] = 10;
                                
                                // Initialize the SC lookup tables
                                
                                // Use an intermediate sign code lookup table that is similar to the
                                // one in the VM text, in that it depends on the 'h' and 'v'
                                // quantities. The index into this table is a 6 bit index, the top 3
                                // bits are (h+1) and the low 3 bits (v+1).
                                inter_sc_lut = new int[36];
                                inter_sc_lut[(2 << 3) | 2] = 15;
                                inter_sc_lut[(2 << 3) | 1] = 14;
                                inter_sc_lut[(2 << 3) | 0] = 13;
                                inter_sc_lut[(1 << 3) | 2] = 12;
                                inter_sc_lut[(1 << 3) | 1] = 11;
                                inter_sc_lut[(1 << 3) | 0] = 12 | INT_SIGN_BIT;
                                inter_sc_lut[(0 << 3) | 2] = 13 | INT_SIGN_BIT;
                                inter_sc_lut[(0 << 3) | 1] = 14 | INT_SIGN_BIT;
                                inter_sc_lut[(0 << 3) | 0] = 15 | INT_SIGN_BIT;
                                
                                // Using the intermediate sign code lookup table create the final
                                // one. The index into this table is a 9 bit index, the low 4 bits are 
                                // the significance of the 4 horizontal/vertical neighbors, while the
                                // top 4 bits are the signs of those neighbors. The bit in the middle
                                // is ignored. This index arrangement matches the state bits in the
                                // 'state' array, thus direct addressing of the table can be done from 
                                // the sate information.
                                for (i = 0; i < (1 << SC_LUT_BITS) - 1; i++)
                                {
                                        ds = i & 0x01; // significance of down neighbor
                                        us = (i >> 1) & 0x01; // significance of up neighbor
                                        rs = (i >> 2) & 0x01; // significance of right neighbor
                                        ls = (i >> 3) & 0x01; // significance of left neighbor
                                        dsgn = (i >> 5) & 0x01; // sign of down neighbor
                                        usgn = (i >> 6) & 0x01; // sign of up neighbor
                                        rsgn = (i >> 7) & 0x01; // sign of right neighbor
                                        lsgn = (i >> 8) & 0x01; // sign of left neighbor
                                        // Calculate 'h' and 'v' as in VM text
                                        h = ls * (1 - 2 * lsgn) + rs * (1 - 2 * rsgn);
                                        h = (h >= - 1)?h:- 1;
                                        h = (h <= 1)?h:1;
                                        v = us * (1 - 2 * usgn) + ds * (1 - 2 * dsgn);
                                        v = (v >= - 1)?v:- 1;
                                        v = (v <= 1)?v:1;
                                        // Get context and sign predictor from 'inter_sc_lut'
                                        SC_LUT[i] = inter_sc_lut[(h + 1) << 3 | (v + 1)];
                                }
                                inter_sc_lut = null;
                                
                                // Initialize the MR lookup tables
                                
                                // None significant, prev MR off
                                MR_LUT[0] = 16;
                                // One or more significant, prev MR off
                                for (i = 1; i < (1 << (MR_LUT_BITS - 1)); i++)
                                {
                                        MR_LUT[i] = 17;
                                }
                                // Previous MR on, significance irrelevant
                                for (; i < (1 << MR_LUT_BITS); i++)
                                {
                                        MR_LUT[i] = 18;
                                }
                                
                                // Initialize the distortion estimation lookup tables
                                
                                // fs tables
                                for (i = 0; i < (1 << MSE_LKP_BITS_M1); i++)
                                {
                                        // In fs we index by val-1, since val is really: 1 <= val < 2
                                        val = (double) i / (1 << MSE_LKP_BITS_M1) + 1.0;
                                        deltaMSE = val * val;
                                        //UPGRADE_WARNING: Data types in Visual C# might be different.  Verify the accuracy of narrowing conversions. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1042'"
                                        FS_LOSSLESS[i] = (int) System.Math.Floor(deltaMSE * ((double) (1 << MSE_LKP_FRAC_BITS)) + 0.5);
                                        val -= 1.5;
                                        deltaMSE -= val * val;
                                        //UPGRADE_WARNING: Data types in Visual C# might be different.  Verify the accuracy of narrowing conversions. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1042'"
                                        FS_LOSSY[i] = (int) System.Math.Floor(deltaMSE * ((double) (1 << MSE_LKP_FRAC_BITS)) + 0.5);
                                }
                                
                                // fm tables
                                for (i = 0; i < (1 << MSE_LKP_BITS); i++)
                                {
                                        val = (double) i / (1 << MSE_LKP_BITS_M1);
                                        deltaMSE = (val - 1.0) * (val - 1.0);
                                        //UPGRADE_WARNING: Data types in Visual C# might be different.  Verify the accuracy of narrowing conversions. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1042'"
                                        FM_LOSSLESS[i] = (int) System.Math.Floor(deltaMSE * ((double) (1 << MSE_LKP_FRAC_BITS)) + 0.5);
                                        val -= ((i < (1 << MSE_LKP_BITS_M1))?0.5:1.5);
                                        deltaMSE -= val * val;
                                        //UPGRADE_WARNING: Data types in Visual C# might be different.  Verify the accuracy of narrowing conversions. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1042'"
                                        FM_LOSSY[i] = (int) System.Math.Floor(deltaMSE * ((double) (1 << MSE_LKP_FRAC_BITS)) + 0.5);
                                }
                        }
                }
        }
}

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